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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

F-box_domain_containing_protein__YP_009482772__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009482772 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

68.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 659-759
PDB
Domain cluster: rep: hypothetical_protein_pdul_cds_71__YP_008318630__Pandoravirus_dulcis__1349409__D656-747
D2 medium residues 120-188
PDB
Domain cluster: rep: F-box_incomplete_domain_containing_protein__YP_008318724__Pandoravirus_dulcis__1349409__D16-76
D3 medium residues 189-248
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 57.0 4.98e-01 86.7% 65.9%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 4.81e-01 86.7% 67.0%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 4.86e-01 86.7% 71.8%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 4.81e-01 86.7% 69.4%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 45.0 4.61e-01 71.7% 93.1%
2b8iA00 1.20.1280.100 Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain 0.66 47.0 4.38e-01 76.7% 63.6%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.74e-01 86.7% 80.0%
1gw5B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 53.0 3.04e-01 95.0% 14.9%
2mg4A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 43.0 4.18e-01 76.7% 69.7%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 38.0 2.72e-01 75.0% 90.4%
3cz6A01 1.20.120.1480 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 36.0 3.12e-01 73.3% 74.0%
7fsfA02 3.30.56.80 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.52 37.0 3.60e-01 76.7% 98.6%
3bhgA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.52 35.0 3.02e-01 75.0% 50.4%
3uitA02 1.20.1270.460 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 40.0 3.28e-01 93.3% 66.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3219897 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 47.0 5.05e-01 76.7% 82.0%
4505043 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.71 56.0 4.24e-01 86.7% 41.4%
4640327 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.71 56.0 4.36e-01 86.7% 46.2%
1284299 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.70 56.0 4.15e-01 86.7% 39.4%
5032747 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.69 55.0 4.46e-01 86.7% 51.3%
5003985 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.67 53.0 4.12e-01 86.7% 44.4%
3409418 101.1.1.244 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_TIMELESS 0.66 56.0 5.27e-01 100.0% 92.0%
3587856 2004.1.1.342 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_10 0.66 48.0 2.90e-01 78.3% 11.3%
1935905 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.65 54.0 4.16e-01 91.7% 42.3%
3268087 102.1.1.6 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Methyltransf_5 0.64 46.0 3.87e-01 76.7% 47.0%
3475522 101.1.2.507 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 0.60 53.0 4.13e-01 100.0% 53.8%
3170154 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 48.0 3.61e-01 100.0% 85.9%
1346823 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.58 46.0 4.57e-01 88.3% 92.2%
3532283 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.55 45.0 3.87e-01 96.7% 61.0%
3936724 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.51 40.0 3.88e-01 95.0% 98.7%
D4 medium residues 269-385_439-469
PDB
Domain cluster: rep: F-box_domain_protein__YP_009120760__Pandoravirus_inopinatum__1605721__D278-381_436-447
D5 medium residues 470-621
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5hb0D01 1.20.120.1880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleoporin, helical C-terminal domain 0.73 63.0 5.28e-01 92.8% 96.0%
5cwhA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.67 57.0 5.71e-01 91.4% 98.7%
1ya0A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 53.0 4.82e-01 84.2% 79.6%
3grlA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 59.0 3.96e-01 99.3% 41.1%
4cemA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 57.0 4.57e-01 95.4% 79.5%
4g26A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 54.0 4.36e-01 90.1% 47.7%
1b89A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 51.0 4.08e-01 100.0% 41.7%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 51.0 4.95e-01 88.8% 93.1%
1kt1A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 50.0 4.94e-01 88.8% 93.0%
2katA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 39.0 4.39e-01 98.7% 88.7%
1qqeA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 50.0 4.16e-01 98.0% 64.4%
1elwA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 42.0 4.65e-01 100.0% 100.0%
7qihA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 37.0 4.35e-01 73.0% 97.0%
5m72A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 41.0 4.16e-01 84.9% 76.7%
2q7fA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 48.0 4.46e-01 100.0% 74.2%
7kdtA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 44.0 3.49e-01 84.9% 42.4%
4xi0F00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 45.0 4.28e-01 90.1% 74.2%
2vyiA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 42.0 4.50e-01 85.5% 94.5%
2dbaA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 41.0 4.50e-01 77.6% 100.0%
3as5A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 46.0 4.37e-01 99.3% 78.7%
1a17A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 42.0 4.22e-01 86.2% 80.5%
2qfcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 43.0 3.54e-01 85.5% 51.8%
2vq2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 44.0 3.88e-01 87.5% 60.5%
2yhcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 44.0 3.98e-01 90.8% 100.0%
1elrA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 40.0 4.32e-01 81.6% 99.2%
3vtxB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 45.0 4.32e-01 100.0% 81.4%
4i17A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 45.0 4.03e-01 99.3% 80.8%
5djsA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 40.0 4.11e-01 85.5% 88.8%
8g52B01 1.25.40.920 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TRAP transporter T-component 0.50 44.0 3.75e-01 99.3% 63.2%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3938012 109.4.1.427 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SDA1_HEAT 0.69 63.0 4.16e-01 100.0% 39.3%
3377393 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 50.0 5.04e-01 82.2% 85.3%
3756635 109.4.1.839 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Maestro_HEAT 0.63 57.0 4.77e-01 99.3% 74.7%
3395990 109.4.1.295 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COP9_hel_rpt 0.63 57.0 4.52e-01 100.0% 59.7%
3809325 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.61 48.0 4.95e-01 85.5% 87.6%
3740160 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 50.0 4.36e-01 89.5% 86.8%
3681959 109.27.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 0.60 52.0 5.29e-01 96.7% 96.0%
3552390 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.60 45.0 4.68e-01 100.0% 85.0%
4051953 109.4.1.3099 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_11, TPR_16, TPR_19 0.59 52.0 4.09e-01 99.3% 45.2%
3598387 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 51.0 3.43e-01 95.4% 26.7%
3621036 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 40.0 4.21e-01 84.9% 80.0%
5045289 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.57 43.0 4.58e-01 87.5% 91.5%
3355211 109.4.1.775 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 50.0 4.40e-01 100.0% 72.3%
3922067 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.56 45.0 3.68e-01 84.9% 45.6%
5022081 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.56 46.0 3.87e-01 88.8% 50.7%
3449639 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 45.0 4.75e-01 86.2% 98.5%
3596398 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 48.0 3.78e-01 95.4% 69.7%
3852805 109.4.1.95 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.56 44.0 4.51e-01 82.9% 90.9%
5049930 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.56 47.0 4.65e-01 94.1% 100.0%
3597527 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 49.0 3.40e-01 99.3% 28.3%
3762938 109.4.1.2870 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_16, ARM_TT21, ARM_TT21_4th 0.55 40.0 4.48e-01 90.1% 100.0%
3802249 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.55 47.0 3.24e-01 93.4% 25.9%
3811756 109.4.1.2045 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_6 0.55 48.0 4.52e-01 98.7% 77.4%
3787885 109.4.1.1613 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, ANAPC3, TPR_8 0.55 42.0 2.96e-01 80.9% 29.9%
3276313 109.4.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.55 44.0 4.44e-01 85.5% 86.7%
151899 109.4.1.1473 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_11, TPR_12 0.55 41.0 4.45e-01 82.2% 95.3%
3505770 109.4.1.362 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1,TPR_8 0.54 43.0 3.57e-01 87.5% 46.1%
3811508 109.4.1.1999 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_12, TPR_16 0.54 42.0 3.99e-01 83.6% 67.9%
3835282 109.4.1.1441 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_11, TPR_16 0.54 40.0 3.64e-01 78.9% 55.8%
4009843 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 42.0 3.76e-01 82.9% 96.2%
5062535 109.4.1.198 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.53 43.0 3.57e-01 87.5% 55.2%
5059258 109.4.1.95 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.53 41.0 3.65e-01 84.9% 55.9%
4997374 109.4.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.53 43.0 3.71e-01 88.8% 54.6%
4829354 109.4.1.1306 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_11 0.53 44.0 4.41e-01 90.8% 86.5%
4369831 109.4.1.3076 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, EST1_DNA_bind, TPR_8, TPR_10, TPR_12, TPR_17, TPR_16 0.53 45.0 3.21e-01 92.1% 30.0%
4399679 109.4.1.3077 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_8, TPR_10, TPR_17 0.53 44.0 3.65e-01 90.8% 49.6%
3385208 109.4.1.2589 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, EST1_DNA_bind, TPR_8, TPR_11, TPR_16 0.52 44.0 3.43e-01 90.1% 41.8%
3610838 109.4.1.198 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.51 40.0 3.64e-01 83.6% 60.0%
5071846 109.4.1.195 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_11 0.51 45.0 4.50e-01 98.7% 98.7%
3660039 109.4.1.1717 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DnaJ 0.50 39.0 3.01e-01 82.9% 59.5%