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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

F-box_domain_containing_protein__YP_009482799__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009482799 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

88.4 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (103 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-47
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009482647__Pandoravirus_neocaledonia__2107708__D28-75
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 35.5 9.70e-09 100.0% 80.8%
PF00646.39 F-box 24.7 2.30e-05 95.2% 86.1%
D2 medium residues 90-169
PDB
Domain cluster: rep: Ankyrin_repeat_domain_containing_protein__YP_009482714__Pandoravirus_quercus__2107709__D78-176
D3 medium residues 170-232
PDB
Domain cluster: rep: Ankyrin_repeat_domain_containing_protein__YP_009480689__Pandoravirus_macleodensis__2107707__D456-515
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cymD00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.84 76.0 5.48e-01 100.0% 48.5%
4hbdA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.78 68.0 4.58e-01 100.0% 34.3%
4jgiA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.73 55.0 5.14e-01 82.5% 91.3%
3t9jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 43.0 3.33e-01 74.6% 92.4%
3nivC02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 49.0 4.13e-01 100.0% 100.0%
3kwoA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 42.0 3.24e-01 76.2% 89.3%
1a76A01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.58 46.0 3.28e-01 90.5% 60.9%
2zwiA01 3.40.50.11120 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sialyltransferase, N-terminal GT-B Rossman nucleotide-binding domain 0.58 49.0 3.42e-01 96.8% 78.0%
1f7uA02 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.58 44.0 3.62e-01 85.7% 63.2%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.57 39.0 3.55e-01 71.4% 76.4%
6vq6I01 3.30.2320.30 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal 0.57 42.0 3.59e-01 81.0% 50.9%
1bpoA02 1.25.40.30 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 49.0 3.74e-01 100.0% 49.0%
1oe8A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 46.0 3.88e-01 100.0% 98.4%
3wd6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 46.0 3.89e-01 100.0% 99.2%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.55 39.0 3.49e-01 77.8% 64.3%
6mfvC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 44.0 3.54e-01 100.0% 66.2%
3dwgA01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 45.0 3.29e-01 96.8% 44.5%
1kblA04 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.53 43.0 2.85e-01 100.0% 45.6%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3264552 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.85 67.0 5.75e-01 84.1% 63.2%
3967836 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.84 77.0 5.41e-01 100.0% 43.2%
3248202 109.3.1.10 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_4 0.84 70.0 5.04e-01 96.8% 33.1%
3523343 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.82 73.0 4.94e-01 100.0% 36.8%
3267273 109.3.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.81 73.0 5.95e-01 100.0% 64.3%
3768645 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.81 71.0 4.94e-01 100.0% 37.6%
3370231 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.81 72.0 5.74e-01 100.0% 66.9%
3748383 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.80 71.0 4.78e-01 100.0% 35.7%
3695738 109.3.1.232 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_KRIT1 0.79 70.0 4.24e-01 100.0% 22.5%
3275803 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.79 70.0 4.24e-01 100.0% 17.6%
3875403 109.3.1.163 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 0.78 69.0 4.78e-01 100.0% 39.1%
3272965 109.3.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.77 69.0 5.81e-01 100.0% 67.6%
3394472 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.76 67.0 4.72e-01 100.0% 44.5%
3254410 109.3.1.10 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_4 0.76 65.0 5.18e-01 98.4% 48.0%
3275375 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.75 66.0 4.67e-01 100.0% 33.5%
4325700 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.75 65.0 4.87e-01 98.4% 51.9%
3742998 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.73 63.0 4.59e-01 100.0% 45.0%
3377138 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.67 58.0 3.82e-01 100.0% 29.3%
3347173 109.4.1.1330 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3, PPR_long 0.67 58.0 4.57e-01 100.0% 56.4%
3455616 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.66 56.0 3.83e-01 100.0% 34.1%
3453495 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.64 54.0 3.80e-01 100.0% 39.6%
3818653 109.4.1.1331 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long, E_motif 0.64 53.0 3.84e-01 100.0% 37.1%
3340779 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.63 52.0 4.59e-01 100.0% 72.4%
3668286 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 43.0 4.25e-01 73.0% 88.6%
3824465 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.62 52.0 4.16e-01 100.0% 55.9%
3817460 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.61 51.0 3.97e-01 100.0% 47.1%
3678516 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.60 50.0 4.18e-01 100.0% 57.6%
3939249 2004.1.1.41 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK 0.60 50.0 3.60e-01 96.8% 83.5%
3742992 109.4.1.228 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo84_C 0.55 43.0 3.14e-01 95.2% 57.1%
D4 medium residues 233-292
PDB
Domain cluster: rep: Ankyrin_repeat_domain_containing_protein__YP_009483782__Pandoravirus_quercus__2107709__D1-60