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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

F-box_domain_containing_protein__YP_009483235__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483235 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

77.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-51
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 27.0 4.30e-06 97.3% 66.0%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.96 84.0 8.32e-01 94.6% 92.1%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.93 82.0 4.82e-01 100.0% 13.9%
3ogkB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.86 69.0 6.69e-01 100.0% 80.5%
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.86 74.0 6.99e-01 100.0% 80.4%
4i6jB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.86 73.0 7.09e-01 100.0% 85.7%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.86 73.0 5.56e-01 100.0% 42.5%
2jqtA00 1.20.1280.40 Mainly Alpha › Up-down Bundle › Monooxygenase › HHA 0.69 55.0 4.90e-01 91.9% 66.7%
ECOD (99)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.99 81.0 4.33e-01 86.5% 5.6%
3390129 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.99 92.0 5.38e-01 100.0% 15.4%
3430952 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.98 91.0 4.98e-01 100.0% 7.7%
4422459 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.98 91.0 7.16e-01 100.0% 52.9%
3916304 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.98 91.0 6.60e-01 100.0% 41.1%
3469135 207.1.1.134 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 0.98 91.0 5.04e-01 100.0% 9.7%
None — 0.98 79.0 4.55e-01 86.5% 11.4%
3399647 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.98 90.0 7.74e-01 100.0% 67.3%
3733544 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.97 90.0 4.85e-01 100.0% 6.9%
4012387 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.97 89.0 6.85e-01 100.0% 49.3%
3434959 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.97 78.0 7.23e-01 86.5% 71.1%
3418207 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.97 78.0 7.99e-01 86.5% 91.4%
3403835 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.96 88.0 6.50e-01 100.0% 43.5%
3698443 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.96 87.0 7.80e-01 100.0% 74.0%
3347634 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.96 87.0 8.14e-01 100.0% 84.4%
4284024 207.1.1.224 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF29466, PF29477 0.96 87.0 5.01e-01 100.0% 13.3%
3422989 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.95 87.0 4.75e-01 100.0% 7.9%
3697245 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.95 87.0 8.47e-01 100.0% 92.5%
3319774 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.95 87.0 6.71e-01 100.0% 49.3%
3819371 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.95 82.0 7.08e-01 94.6% 63.6%
3826138 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.95 86.0 4.76e-01 100.0% 8.3%
3665986 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.95 78.0 7.26e-01 89.2% 73.3%
3312286 207.1.1.134 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 0.95 86.0 4.80e-01 100.0% 9.6%
3834035 145.1.1.26 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › LRR_6, DUF7885 0.95 86.0 4.78e-01 100.0% 9.5%
3299681 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.95 86.0 7.73e-01 100.0% 74.0%
3720343 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.95 86.0 6.39e-01 100.0% 43.5%
3202188 207.1.1.309 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_15 0.95 83.0 4.57e-01 97.3% 7.8%
3439829 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.95 86.0 6.29e-01 100.0% 41.1%
3324307 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.94 85.0 6.92e-01 100.0% 56.9%
3314603 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.94 84.0 7.82e-01 97.3% 80.0%
3349925 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 84.0 7.90e-01 100.0% 82.2%
3339201 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 86.0 8.02e-01 100.0% 82.2%
3381011 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 83.0 5.59e-01 97.3% 29.8%
3467883 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.94 79.0 6.59e-01 91.9% 56.7%
3727179 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 84.0 7.86e-01 100.0% 82.2%
3457731 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 83.0 6.28e-01 97.3% 45.0%
3370474 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 83.0 6.84e-01 100.0% 56.9%
None — 0.94 82.0 4.77e-01 97.3% 13.7%
3643098 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.94 84.0 7.27e-01 100.0% 69.1%
3635190 109.3.1.170 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_4 0.93 78.0 4.55e-01 91.9% 12.8%
3685753 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.93 83.0 6.25e-01 100.0% 43.5%
3829036 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 81.0 5.85e-01 94.6% 37.6%
3189958 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.93 83.0 7.79e-01 100.0% 82.2%
3423604 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 80.0 7.18e-01 94.6% 70.0%
3441758 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.93 83.0 4.68e-01 100.0% 10.0%
3693224 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.93 81.0 7.91e-01 97.3% 90.0%
None — 0.93 82.0 4.42e-01 97.3% 6.3%
3825669 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 84.0 7.51e-01 100.0% 76.0%
3834480 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.93 81.0 4.56e-01 97.3% 9.6%
3639389 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.93 82.0 4.51e-01 100.0% 8.4%
3447860 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.92 82.0 7.71e-01 100.0% 82.2%
3396126 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.92 82.0 4.61e-01 100.0% 10.1%
3443498 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.92 80.0 6.00e-01 97.3% 42.4%
3643788 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.92 83.0 7.19e-01 100.0% 70.9%
3660681 207.1.1.246 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box_5 0.92 80.0 4.55e-01 97.3% 10.3%
2860146 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.92 80.0 7.12e-01 100.0% 69.8%
3437951 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.91 80.0 4.43e-01 100.0% 7.8%
2420136 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 79.0 7.07e-01 100.0% 69.8%
3404584 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.91 80.0 7.54e-01 100.0% 82.2%
3204329 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 79.0 5.65e-01 100.0% 36.2%
3835205 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.91 80.0 4.31e-01 97.3% 6.3%
3316546 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.90 79.0 6.74e-01 100.0% 61.7%
3441517 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.90 80.0 4.38e-01 100.0% 7.3%
3300168 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 79.0 6.53e-01 100.0% 56.9%
3207824 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.90 79.0 4.54e-01 100.0% 11.7%
3924438 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 80.0 6.96e-01 100.0% 70.9%
4012180 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 79.0 5.21e-01 100.0% 26.4%
3806502 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 75.0 7.65e-01 97.3% 100.0%
3727492 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 77.0 7.26e-01 100.0% 82.2%
3655771 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.89 77.0 5.60e-01 100.0% 37.0%
4879175 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 79.0 6.54e-01 100.0% 57.8%
3643363 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 77.0 7.58e-01 100.0% 92.5%
3640174 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 77.0 6.13e-01 100.0% 49.3%
3781797 145.1.1.31 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › PF29466 0.89 76.0 7.24e-01 100.0% 82.2%
3315130 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 76.0 7.49e-01 97.3% 90.0%
3725732 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.89 77.0 5.98e-01 100.0% 46.3%
3309226 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 75.0 5.28e-01 100.0% 33.0%
3683657 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.87 74.0 5.73e-01 100.0% 43.5%
3730335 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.87 78.0 7.03e-01 100.0% 82.0%
3698257 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 75.0 5.84e-01 100.0% 46.3%
3633421 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.87 72.0 3.98e-01 97.3% 7.1%
3816494 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.87 74.0 4.13e-01 100.0% 8.6%
3671556 207.1.1.134 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 0.87 77.0 4.14e-01 100.0% 5.6%
3642941 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.86 74.0 4.23e-01 97.3% 12.1%
3210389 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.86 73.0 4.05e-01 100.0% 7.7%
3837757 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 73.0 5.87e-01 100.0% 49.3%
3924097 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 74.0 7.01e-01 100.0% 86.7%
3443195 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 74.0 7.27e-01 100.0% 95.0%
3420019 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 69.0 7.05e-01 94.6% 100.0%
3833961 207.1.1.183 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_2, FBD, LRR_At5g56370 0.85 69.0 3.92e-01 94.6% 8.7%
3184851 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 73.0 5.59e-01 100.0% 45.9%
3434120 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 72.0 7.10e-01 100.0% 94.9%
3433159 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 69.0 6.77e-01 97.3% 90.0%
3814088 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 73.0 6.90e-01 100.0% 84.4%
3448206 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 71.0 6.31e-01 100.0% 67.3%
3354858 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 68.0 6.73e-01 100.0% 92.5%
4018293 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.80 64.0 3.88e-01 100.0% 14.0%
3180622 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 66.0 6.10e-01 100.0% 76.0%
3726805 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 62.0 5.35e-01 100.0% 59.4%
D2 medium residues 65-125
PDB
Domain cluster: rep: F-box_domain_protein__YP_009120011__Pandoravirus_inopinatum__1605721__D67-116
D3 medium residues 210-285
PDB
Domain cluster: rep: F-box_domain__YP_008437604__Pandoravirus_salinus__1349410__D213-284