←Back to structures

F-box_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

F-box_domain_containing_protein__YP_009483294__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483294 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

74.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (32 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-77
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009482610__Pandoravirus_neocaledonia__2107708__D12-61
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 30.7 2.90e-07 93.3% 83.0%
D2 high residues 135-286
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009483832__Pandoravirus_quercus__2107709__D62-270
D3 medium residues 83-134
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qkdA04 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.57 42.0 3.28e-01 82.7% 64.6%
3tufA00 1.10.287.4300 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like 0.56 46.0 3.60e-01 92.3% 45.2%
2fkcA01 3.40.1350.40 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.54 38.0 3.05e-01 73.1% 81.8%
1qruA04 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.53 37.0 3.00e-01 73.1% 99.1%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.51 36.0 3.51e-01 82.7% 75.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1712154 5100.1.1.2 ↗ extended segments › iron-sulfur center-binding helical hairpin › iron-sulfur center-binding helical hairpin › iron-sulfur center-binding helical hairpin › Fe_hydrogense_Fe-S_bd 0.52 38.0 3.86e-01 94.2% 83.0%
D4 medium residues 328-389
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.64 58.0 4.44e-01 100.0% 56.5%
5nz7A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.61 52.0 3.34e-01 100.0% 48.6%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.60 50.0 2.92e-01 100.0% 10.1%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 48.0 3.61e-01 87.1% 78.7%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 49.0 3.33e-01 93.5% 29.8%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 39.0 3.33e-01 71.0% 75.5%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.57 46.0 3.15e-01 95.2% 49.0%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 39.0 3.28e-01 71.0% 77.9%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.56 49.0 4.25e-01 100.0% 91.8%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 38.0 3.22e-01 71.0% 79.4%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.56 48.0 4.07e-01 100.0% 84.4%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.85e-01 87.1% 98.9%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 44.0 3.33e-01 98.4% 36.2%
1agjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 40.0 3.18e-01 83.9% 76.9%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 39.0 3.28e-01 82.3% 79.1%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 42.0 3.22e-01 98.4% 36.9%
3h09A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 42.0 2.83e-01 100.0% 93.6%
4r1kB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.29e-01 91.9% 55.9%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.52 39.0 3.23e-01 87.1% 54.7%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 36.0 3.07e-01 77.4% 45.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965839 77.1.1.6 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 0.66 58.0 4.38e-01 100.0% 49.0%
4681334 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.66 55.0 3.69e-01 100.0% 23.1%
3965131 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.65 55.0 4.83e-01 100.0% 63.3%
1498413 3894.1.1.0 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain 0.64 52.0 4.23e-01 100.0% 46.1%
4031984 3894.1.1.1 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.63 56.0 4.40e-01 100.0% 48.0%
2631766 3894.1.1.1 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.63 54.0 4.31e-01 100.0% 46.8%
3976809 77.1.1.6 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 0.63 56.0 4.06e-01 100.0% 46.3%
1099835 77.1.1.1 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.63 57.0 4.73e-01 100.0% 72.6%
2162624 3894.1.1.1 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.63 54.0 4.27e-01 100.0% 46.8%
4390281 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.62 54.0 4.38e-01 100.0% 82.5%
3236808 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.61 54.0 4.97e-01 98.4% 76.2%
3415741 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 41.0 3.17e-01 83.9% 32.4%
3367547 844.1.1.4 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.56 48.0 3.46e-01 100.0% 35.1%
3301582 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.55 44.0 3.14e-01 87.1% 35.4%
4997755 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.55 43.0 3.17e-01 87.1% 37.8%
4067273 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.55 46.0 3.43e-01 95.2% 38.8%
3559319 101.1.11.134 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › Sarcoglycan_1 0.54 42.0 4.28e-01 100.0% 88.3%
4465258 79.1.1.18 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 0.54 42.0 3.61e-01 100.0% 53.0%
3221377 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.54 44.0 3.70e-01 95.2% 75.7%
22087 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.53 40.0 2.73e-01 82.3% 78.8%
3925908 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.53 43.0 3.07e-01 95.2% 36.2%
3583042 79.1.1.18 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 0.52 41.0 3.18e-01 100.0% 38.6%
4645764 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.52 42.0 3.22e-01 98.4% 37.6%
3990726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 33.0 3.58e-01 72.6% 91.1%