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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

F-box_domain_containing_protein__YP_009483372__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483372 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

67.6 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 19-69
PDB
Domain cluster: rep: F-box_domain__YP_008437493__Pandoravirus_salinus__1349410__D24-74
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 28.4 1.60e-06 84.3% 70.2%
PF00646.39 F-box 25.7 1.10e-05 68.6% 65.1%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e31A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.88 64.0 5.93e-01 76.5% 67.7%
3d5lA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.38e-01 78.4% 100.0%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.55 39.0 3.10e-01 78.4% 72.6%
6q9jB02 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.51 39.0 3.44e-01 92.2% 71.6%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3618416 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 67.0 7.53e-01 76.5% 95.0%
3617100 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 67.0 6.11e-01 76.5% 60.0%
4879175 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 68.0 6.21e-01 78.4% 93.8%
3823345 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.90 62.0 6.33e-01 72.5% 74.0%
3470594 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 65.0 6.39e-01 80.4% 72.7%
3806207 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.88 62.0 6.89e-01 74.5% 95.0%
3544561 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 69.0 5.84e-01 84.3% 93.8%
3450600 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.87 63.0 6.59e-01 76.5% 86.7%
3875490 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 70.0 5.65e-01 86.3% 98.9%
3440864 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 62.0 6.29e-01 76.5% 80.0%
3879309 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 67.0 5.96e-01 84.3% 87.1%
3761388 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 69.0 5.73e-01 88.2% 91.8%
3902012 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 66.0 5.89e-01 84.3% 87.1%
3995930 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 63.0 5.80e-01 82.4% 63.1%
3729172 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 65.0 5.00e-01 84.3% 80.9%
4245088 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 67.0 5.83e-01 86.3% 84.0%
3669426 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 62.0 6.69e-01 80.4% 95.3%
3545077 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 71.0 6.68e-01 92.2% 85.0%
3991559 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 62.0 5.89e-01 80.4% 70.0%
3738910 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 64.0 5.36e-01 84.3% 78.8%
3233721 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 62.0 5.13e-01 82.4% 75.6%
3840709 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 63.0 5.11e-01 84.3% 66.3%
3300009 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 72.0 6.19e-01 100.0% 92.5%
3185324 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 72.0 6.15e-01 100.0% 97.5%
3492973 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.79 73.0 4.30e-01 100.0% 23.7%
3865783 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.79 72.0 3.95e-01 100.0% 11.7%
3537637 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 72.0 4.39e-01 100.0% 28.1%
3927915 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 67.0 5.81e-01 92.2% 72.0%
None — 0.78 72.0 4.21e-01 100.0% 19.2%
3827758 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.77 70.0 4.20e-01 100.0% 17.2%
3807195 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 70.0 6.26e-01 100.0% 81.4%
3825072 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.77 70.0 4.23e-01 100.0% 23.3%
3817998 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 69.0 4.34e-01 100.0% 31.4%
3465759 207.1.1.99 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At5g56370 0.76 68.0 4.27e-01 100.0% 32.4%
3274776 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 66.0 5.36e-01 100.0% 78.9%
3423552 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.73 66.0 4.33e-01 100.0% 42.0%
3276410 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 64.0 5.39e-01 100.0% 84.7%
3187719 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 61.0 5.40e-01 100.0% 88.0%
3643709 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 54.0 5.32e-01 86.3% 92.7%
3225449 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.54 39.0 3.62e-01 84.3% 81.3%
4271716 101.28.1.1 ↗ alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins › FlhC 0.51 34.0 3.08e-01 74.5% 90.6%
D2 medium residues 70-131_145-167
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.75 51.0 4.84e-01 70.6% 81.0%
6tblB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 41.0 3.83e-01 71.8% 67.6%
1yz5B00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.56 39.0 2.93e-01 71.8% 39.7%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.51 36.0 3.40e-01 98.8% 60.0%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.51 44.0 3.92e-01 100.0% 100.0%
3c5iA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.50 44.0 3.15e-01 100.0% 85.1%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3193656 109.4.1.1403 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TBCD, ARM_TBCD_2nd 0.59 41.0 2.52e-01 72.9% 31.4%
3914926 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.51 38.0 2.77e-01 78.8% 86.4%