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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

F-box_domain_containing_protein__YP_009483379__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483379 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

70.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-85
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009481465__Pandoravirus_macleodensis__2107707__D33-82_97-143
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 31.0 2.40e-07 60.0% 95.7%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.75 68.0 6.30e-01 100.0% 85.0%
2e31A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.69 48.0 5.26e-01 90.0% 91.9%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.65 58.0 5.45e-01 100.0% 85.9%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.64 56.0 5.49e-01 100.0% 95.5%
2cz2A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 41.0 3.52e-01 76.2% 86.5%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 34.0 3.46e-01 70.0% 61.5%
3cjdA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 48.0 3.76e-01 100.0% 92.9%
1yw0A00 1.20.58.480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 46.0 3.39e-01 98.8% 82.7%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.54 49.0 3.40e-01 100.0% 39.4%
2x0cA01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.53 45.0 3.60e-01 100.0% 91.6%
6z0fA02 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.52 45.0 3.62e-01 100.0% 62.0%
2g7lA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 44.0 3.38e-01 100.0% 86.1%
ECOD (94)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3806475 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 70.0 7.25e-01 100.0% 89.3%
3810074 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.87 71.0 7.14e-01 100.0% 86.1%
3617852 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 71.0 7.52e-01 100.0% 98.6%
3248494 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 62.0 6.80e-01 98.8% 92.3%
3762363 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 67.0 3.93e-01 95.0% 11.8%
3643181 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 69.0 7.11e-01 100.0% 90.7%
3901480 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 72.0 7.22e-01 100.0% 90.0%
3845951 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 68.0 6.65e-01 96.2% 80.0%
3407033 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 69.0 7.13e-01 100.0% 93.3%
3879992 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 70.0 7.02e-01 100.0% 87.5%
3770072 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 69.0 6.65e-01 100.0% 77.8%
3358453 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 65.0 6.92e-01 100.0% 92.9%
3429995 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 64.0 6.68e-01 98.8% 87.7%
3547224 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 63.0 6.15e-01 92.5% 75.3%
3276040 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 58.0 6.17e-01 100.0% 84.3%
3652521 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 68.0 7.09e-01 98.8% 97.3%
3257162 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 66.0 5.97e-01 100.0% 65.7%
3337545 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 62.0 6.80e-01 97.5% 100.0%
3350782 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 68.0 4.43e-01 100.0% 22.4%
3827406 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 70.0 6.83e-01 98.8% 87.1%
3595717 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.80 59.0 6.43e-01 92.5% 93.8%
3300009 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 67.0 6.72e-01 100.0% 88.7%
3886321 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 66.0 6.68e-01 100.0% 88.7%
3803973 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 62.0 6.64e-01 93.8% 94.3%
3559990 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 68.0 6.82e-01 100.0% 91.3%
4023603 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 62.0 6.56e-01 96.2% 92.9%
3821430 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 64.0 6.46e-01 100.0% 86.3%
3903968 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 65.0 6.74e-01 100.0% 94.7%
3250931 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 62.0 6.40e-01 100.0% 89.3%
3903969 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 65.0 6.22e-01 100.0% 77.8%
3898084 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 67.0 5.82e-01 100.0% 60.8%
3812507 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 64.0 6.11e-01 100.0% 74.2%
3373180 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 69.0 4.73e-01 100.0% 29.5%
3363533 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 68.0 7.05e-01 98.8% 98.7%
3666811 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 68.0 5.92e-01 100.0% 62.5%
3320433 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 56.0 6.40e-01 93.8% 100.0%
3664817 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 67.0 6.78e-01 100.0% 92.5%
3323668 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 65.0 6.76e-01 100.0% 96.0%
3380116 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 58.0 6.23e-01 97.5% 92.6%
3259869 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 68.0 6.65e-01 100.0% 89.4%
3861026 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 63.0 5.90e-01 100.0% 72.4%
3472074 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 63.0 5.97e-01 100.0% 75.8%
3668652 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 66.0 6.81e-01 100.0% 98.7%
3312720 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 64.0 6.65e-01 100.0% 97.3%
3204329 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 71.0 6.40e-01 100.0% 86.7%
4019682 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 71.0 6.63e-01 100.0% 86.3%
3308764 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 65.0 6.75e-01 100.0% 100.0%
3706611 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 54.0 5.71e-01 73.8% 88.6%
3457731 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 67.0 6.74e-01 100.0% 96.2%
3664299 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 69.0 6.54e-01 100.0% 86.3%
3256545 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 55.0 5.96e-01 90.0% 93.8%
3738910 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 62.0 6.12e-01 100.0% 83.5%
3651806 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 62.0 6.25e-01 100.0% 88.7%
3453805 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 62.0 5.70e-01 98.8% 68.6%
3644704 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 66.0 6.54e-01 100.0% 91.8%
3355293 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 69.0 6.39e-01 100.0% 87.0%
3715255 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 49.0 5.71e-01 86.3% 96.4%
3446581 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 69.0 6.74e-01 100.0% 92.9%
3781279 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 63.0 6.31e-01 100.0% 91.3%
3425357 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 65.0 6.60e-01 100.0% 96.2%
3442747 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 69.0 6.45e-01 98.8% 88.4%
3699732 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 60.0 6.34e-01 97.5% 98.6%
3344543 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.74 65.0 6.45e-01 100.0% 90.6%
3176338 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 59.0 5.96e-01 100.0% 86.3%
3194125 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 65.0 6.51e-01 100.0% 93.8%
3273645 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 67.0 6.79e-01 100.0% 98.8%
3925121 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 68.0 6.03e-01 100.0% 77.3%
4500280 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 60.0 5.94e-01 100.0% 82.4%
3186415 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 63.0 6.24e-01 100.0% 89.4%
3200311 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 60.0 6.05e-01 100.0% 88.7%
4545458 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 66.0 6.10e-01 100.0% 89.0%
4023099 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 67.0 5.85e-01 100.0% 82.6%
3363836 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 65.0 6.36e-01 100.0% 91.8%
3348915 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 66.0 5.89e-01 100.0% 80.0%
3536855 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 66.0 6.20e-01 98.8% 90.5%
3644174 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 61.0 6.30e-01 98.8% 97.3%
3696138 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 65.0 6.15e-01 100.0% 84.2%
3355899 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 67.0 6.55e-01 100.0% 96.5%
3473623 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 57.0 5.59e-01 100.0% 81.2%
3491937 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 65.0 6.28e-01 100.0% 91.1%
3428197 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.71 62.0 6.26e-01 98.8% 96.2%
3209791 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 52.0 5.62e-01 87.5% 95.4%
3902311 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 65.0 6.38e-01 100.0% 97.6%
3785386 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 61.0 6.11e-01 100.0% 95.0%
3189083 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.70 53.0 5.44e-01 100.0% 86.7%
3729172 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 63.0 5.66e-01 100.0% 84.5%
3731690 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 58.0 5.83e-01 100.0% 91.3%
4040935 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 64.0 5.59e-01 100.0% 90.4%
3331958 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.69 61.0 5.75e-01 100.0% 82.1%
3257315 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 51.0 5.35e-01 92.5% 90.0%
3579997 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.68 54.0 5.75e-01 97.5% 100.0%
3917759 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.63 55.0 5.15e-01 97.5% 91.0%
None — 0.59 55.0 3.87e-01 100.0% 89.1%
3419846 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.53 47.0 4.30e-01 98.8% 93.3%
D2 high residues 89-215
PDB