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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

F-box_domain_containing_protein__YP_009483486__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483486 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

66.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-99
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009482610__Pandoravirus_neocaledonia__2107708__D12-61
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 39.9 3.90e-10 95.7% 93.6%
PF00646.39 F-box 27.1 4.00e-06 87.2% 93.0%
D2 high residues 506-607
PDB
D3 high residues 674-830
PDB
Domain cluster: rep: F-box_domain__YP_008438009__Pandoravirus_salinus__1349410__D639-658_678-702_740-841
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00805.29 best Pentapeptide 17.9 2.50e-03 24.2% 90.0%
D4 medium residues 103-254
PDB
Domain cluster: rep: morn_repeat_domain__YP_008437177__Pandoravirus_salinus__1349410__D172-314
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 3.16e-01 90.1% 73.1%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 4.26e-01 94.1% 92.1%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 23.0 2.85e-01 92.1% 64.8%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.50 25.0 3.33e-01 80.3% 90.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3253682 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.78 44.0 4.44e-01 82.9% 56.7%
3616219 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.74 45.0 4.75e-01 82.9% 67.4%
4027722 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.64 44.0 4.86e-01 82.2% 84.8%
3711519 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.63 41.0 4.00e-01 84.2% 59.4%
3416878 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.61 44.0 4.13e-01 80.9% 60.5%
3889028 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.59 45.0 4.29e-01 84.2% 69.4%
3875250 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.57 45.0 4.39e-01 84.2% 75.2%
3763479 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.57 45.0 3.71e-01 84.2% 49.0%
3605869 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.56 46.0 3.79e-01 84.9% 54.2%
3593136 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.56 45.0 4.30e-01 84.2% 86.9%
3539857 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.55 43.0 3.77e-01 84.2% 56.7%
3772693 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.55 43.0 3.82e-01 84.2% 58.6%
1622905 719.1.1.4 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › SAS-6_N 0.55 26.0 3.72e-01 78.9% 98.6%
4031483 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 30.0 3.71e-01 84.2% 91.1%
4027918 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.53 39.0 3.91e-01 77.0% 74.4%
3559952 71.2.1.4 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.52 40.0 3.46e-01 81.6% 72.5%
2769360 719.1.1.4 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › SAS-6_N 0.51 27.0 3.67e-01 85.5% 100.0%
3700623 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 40.0 3.79e-01 83.6% 96.8%
4956163 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.51 35.0 3.35e-01 71.7% 83.9%
3449212 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.50 38.0 3.35e-01 79.6% 62.6%
D5 medium residues 255-330
PDB
D6 medium residues 393-505
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u5mA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.56 20.0 3.06e-01 82.3% 88.9%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 26.0 3.32e-01 92.9% 76.9%
1c48A00 2.40.50.70 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 26.0 3.20e-01 96.5% 72.5%
2hyjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 32.0 2.98e-01 77.0% 46.3%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3245756 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.63 22.0 3.66e-01 91.2% 100.0%
3199196 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.56 17.0 2.93e-01 81.4% 82.9%
4929317 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 24.0 3.27e-01 75.2% 86.0%
3930688 4308.1.1.1 ↗ a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.51 38.0 3.23e-01 78.8% 85.6%