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F-box_domain_containing_protein
Euk-VirPandoravirus_quercus
F-box_domain_containing_protein__YP_009483582__Pandoravirus_quercus__2107709
Identity
- Accession:
- YP_009483582 ↗
- Protein ID:
- F-box_domain_containing_protein
- Kingdom:
- euk
Quality
65.7
mean pLDDT
Cluster
View cluster (32 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 106-228_242-314
D2
medium
residues 322-465_541-576
D3
medium
residues 466-540
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.63 | 43.0 | 3.87e-01 | 70.7% | 81.6% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 36.0 | 3.88e-01 | 78.7% | 70.8% |
| 4dzoA02 | 3.30.457.60 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.58 | 36.0 | 3.66e-01 | 70.7% | 61.0% |
| 2efiA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 47.0 | 4.30e-01 | 100.0% | 67.0% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.57 | 39.0 | 3.95e-01 | 78.7% | 70.1% |
| 5ic7A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 45.0 | 2.98e-01 | 88.0% | 36.5% |
| 6t5kC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.57 | 42.0 | 3.04e-01 | 78.7% | 71.4% |
| 4bq6F00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.57 | 43.0 | 3.50e-01 | 82.7% | 73.2% |
| 3mzkB01 | 6.20.50.30 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.57 | 29.0 | 3.71e-01 | 78.7% | 94.7% |
| 4n4bA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 45.0 | 2.95e-01 | 88.0% | 93.4% |
| 4d47A00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 47.0 | 3.03e-01 | 100.0% | 34.8% |
| 6vilA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.55 | 48.0 | 3.90e-01 | 98.7% | 69.7% |
| 7bj4A01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 47.0 | 3.06e-01 | 100.0% | 41.2% |
| 2jiiA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 40.0 | 3.62e-01 | 89.3% | 55.5% |
| 3kw2A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.53 | 33.0 | 3.51e-01 | 70.7% | 69.1% |
| 1h6lA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.53 | 43.0 | 2.80e-01 | 89.3% | 38.8% |
| 1a7tA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 39.0 | 2.80e-01 | 78.7% | 90.7% |
| 3dlbA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 34.0 | 2.65e-01 | 74.7% | 29.1% |
| 1oygA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 39.0 | 2.47e-01 | 81.3% | 49.3% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 37.0 | 3.85e-01 | 73.3% | 97.1% |
| 5da9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 46.0 | 2.99e-01 | 100.0% | 40.9% |
| 1jmxA02 | 2.40.128.120 | Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 | 0.52 | 39.0 | 3.51e-01 | 85.3% | 57.8% |
| 1kyfA01 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.51 | 38.0 | 3.25e-01 | 82.7% | 69.4% |
| 1wchA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 41.0 | 2.75e-01 | 90.7% | 30.8% |
| 4qqsB00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 38.0 | 2.56e-01 | 81.3% | 69.0% |
| 8gn6A01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.51 | 42.0 | 2.81e-01 | 97.3% | 56.1% |
| 3p9vA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 41.0 | 3.28e-01 | 90.7% | 61.4% |
| 5cw7B00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.50 | 34.0 | 3.17e-01 | 76.0% | 55.3% |
| 1ospO01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.50 | 37.0 | 3.34e-01 | 78.7% | 71.4% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4049264 | 4099.1.1.26 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Kre28 | 0.72 | 53.0 | 4.62e-01 | 78.7% | 58.8% |
| 3446652 | 331.3.1.40 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1997 | 0.67 | 55.0 | 4.15e-01 | 92.0% | 77.8% |
| 2628565 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.66 | 36.0 | 4.63e-01 | 70.7% | 100.0% |
| 3427206 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.60 | 51.0 | 3.44e-01 | 100.0% | 38.2% |
| 3164479 | 3523.1.1.1 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG | 0.58 | 51.0 | 4.78e-01 | 100.0% | 86.3% |
| 3255634 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 46.0 | 2.89e-01 | 88.0% | 35.0% |
| 3507351 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.57 | 47.0 | 2.96e-01 | 88.0% | 31.7% |
| 4039533 | 3321.1.1.1 ↗ | a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander | 0.56 | 43.0 | 3.42e-01 | 90.7% | 39.4% |
| 4196590 | 5.1.2.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N | 0.56 | 41.0 | 2.77e-01 | 82.7% | 43.2% |
| 3230062 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.55 | 37.0 | 3.41e-01 | 73.3% | 52.0% |
| 3741319 | 5.1.4.223 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd | 0.55 | 45.0 | 3.15e-01 | 90.7% | 43.5% |
| 3999127 | 109.21.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 | 0.55 | 44.0 | 2.55e-01 | 88.0% | 20.0% |
| 3738266 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.54 | 50.0 | 2.93e-01 | 100.0% | 23.9% |
| 5044296 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 43.0 | 4.26e-01 | 96.0% | 87.2% |
| 3721094 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 39.0 | 2.79e-01 | 77.3% | 56.4% |
| 3257765 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.53 | 44.0 | 3.37e-01 | 90.7% | 55.9% |
| 4937423 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 35.0 | 3.41e-01 | 86.7% | 60.0% |
| 5044192 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.53 | 42.0 | 2.66e-01 | 90.7% | 40.0% |
| 3920715 | 2004.1.1.674 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21, AAA_23, SbcC_Walker_B | 0.52 | 47.0 | 2.85e-01 | 100.0% | 26.9% |
| 4438074 | 223.1.1.5 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HrcA | 0.52 | 34.0 | 2.81e-01 | 92.0% | 35.2% |
| 3394203 | 5.1.4.223 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd | 0.52 | 44.0 | 3.06e-01 | 100.0% | 53.1% |
| 3416138 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 42.0 | 2.69e-01 | 89.3% | 28.7% |
| 3587781 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 37.0 | 3.07e-01 | 76.0% | 78.5% |
| 3980770 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.51 | 36.0 | 2.92e-01 | 97.3% | 35.2% |
| 4984555 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.51 | 37.0 | 2.57e-01 | 80.0% | 50.5% |
| 3553208 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.50 | 35.0 | 2.35e-01 | 76.0% | 18.6% |
D4
medium
residues 577-626
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3s2cA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.65 | 55.0 | 3.37e-01 | 100.0% | 29.6% |
| 2xmxA01 | 1.20.1440.280 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.65 | 52.0 | 3.92e-01 | 96.0% | 50.0% |
| 1go3F02 | 6.10.140.10 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 44.0 | 4.52e-01 | 72.0% | 80.9% |
| 3ajaB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 48.0 | 3.16e-01 | 100.0% | 51.5% |
| 2pljA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.58 | 49.0 | 3.23e-01 | 100.0% | 47.2% |
| 1gkrA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.58 | 49.0 | 3.00e-01 | 100.0% | 22.8% |
| 2d4aD01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 46.0 | 3.43e-01 | 94.0% | 85.8% |
| 1sw6A00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.57 | 46.0 | 3.02e-01 | 96.0% | 23.6% |
| 1yo6F00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 45.0 | 3.06e-01 | 100.0% | 99.1% |
| 1m93A00 | 1.10.287.580 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.55 | 38.0 | 3.98e-01 | 74.0% | 97.8% |
| 2jwkA00 | 3.30.420.270 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.55 | 47.0 | 4.18e-01 | 100.0% | 89.2% |
| 2napA02 | 3.40.50.740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 43.0 | 2.71e-01 | 90.0% | 52.9% |
| 3vpgA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 42.0 | 3.23e-01 | 98.0% | 85.8% |
| 4dqxB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 44.0 | 2.93e-01 | 100.0% | 65.1% |
| 6hpdA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 45.0 | 2.86e-01 | 100.0% | 30.5% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3195249 | 3758.1.1.46 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Ferritin_C144_05 | 0.71 | 61.0 | 4.02e-01 | 98.0% | 74.0% |
| 4961036 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.68 | 55.0 | 4.15e-01 | 92.0% | 72.0% |
| 4011325 | 168.1.1.0 ↗ | alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain | 0.65 | 53.0 | 3.81e-01 | 96.0% | 40.0% |
| 4996199 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.61 | 44.0 | 3.20e-01 | 78.0% | 42.0% |
| 3588190 | 2002.1.1.146 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.61 | 50.0 | 3.04e-01 | 98.0% | 41.6% |
| 3285537 | 2002.1.1.101 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Orn_Arg_deC_N | 0.60 | 49.0 | 3.30e-01 | 100.0% | 59.6% |
| 3391260 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.60 | 46.0 | 4.65e-01 | 94.0% | 88.0% |
| 4958433 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.59 | 43.0 | 3.29e-01 | 82.0% | 73.1% |
| 3457996 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 48.0 | 3.73e-01 | 94.0% | 46.1% |
| 3522702 | 109.4.1.643 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG2_C | 0.59 | 47.0 | 2.71e-01 | 100.0% | 19.3% |
| 3601781 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.58 | 47.0 | 2.78e-01 | 92.0% | 11.4% |
| 3220934 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.56 | 45.0 | 2.97e-01 | 98.0% | 46.3% |
| 3725203 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.54 | 45.0 | 2.86e-01 | 100.0% | 46.3% |