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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

F-box_domain_containing_protein__YP_009483661__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483661 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

64.6 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 49-99
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00646.39 best F-box 22.7 9.80e-05 78.4% 81.4%
PF12937.13 F-box-like 24.5 2.60e-05 72.5% 72.3%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.89 62.0 6.96e-01 72.5% 100.0%
4i6jB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.83 57.0 6.16e-01 72.5% 92.9%
2e31A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.82 56.0 5.28e-01 72.5% 64.5%
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.81 57.0 5.91e-01 74.5% 82.6%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.75 60.0 5.06e-01 90.2% 71.3%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.72 56.0 4.65e-01 90.2% 87.0%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.72 57.0 4.07e-01 90.2% 51.2%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.69 58.0 4.77e-01 98.0% 93.9%
4fqgB03 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.60 42.0 3.88e-01 74.5% 100.0%
7vw6B01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.57 44.0 4.06e-01 86.3% 77.6%
2c12A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.54 42.0 3.40e-01 98.0% 94.5%
5jpnB01 1.20.91.20 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) 0.52 40.0 3.70e-01 92.2% 97.2%
2i0kA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.51 37.0 2.41e-01 82.4% 58.7%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.50 35.0 2.49e-01 78.4% 62.2%
ECOD (95)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3786009 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.91 63.0 6.64e-01 72.5% 82.2%
3341479 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 64.0 5.68e-01 74.5% 54.3%
3349711 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 62.0 6.50e-01 74.5% 84.4%
3998412 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.87 61.0 6.81e-01 76.5% 95.0%
3420610 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 61.0 5.97e-01 74.5% 74.5%
3173927 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 61.0 6.40e-01 74.5% 84.4%
3331704 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 60.0 6.10e-01 74.5% 76.0%
3501462 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 63.0 6.95e-01 80.4% 100.0%
3731257 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 60.0 6.53e-01 74.5% 95.0%
3215528 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 60.0 6.07e-01 74.5% 76.0%
3380603 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 59.0 6.23e-01 74.5% 84.4%
3635440 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 59.0 5.99e-01 74.5% 76.0%
3270939 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 57.0 6.25e-01 72.5% 95.0%
3228990 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 56.0 6.10e-01 70.6% 90.0%
3261282 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 59.0 5.74e-01 74.5% 72.7%
3582067 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 58.0 5.93e-01 74.5% 78.0%
3236496 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.82 68.0 4.19e-01 88.2% 20.8%
3202320 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.82 63.0 3.63e-01 82.4% 10.0%
3628631 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 57.0 5.45e-01 74.5% 63.3%
1807269 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 57.0 5.88e-01 74.5% 79.2%
4017103 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.81 64.0 3.77e-01 84.3% 11.9%
3633495 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 57.0 6.12e-01 74.5% 95.0%
3687689 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.81 62.0 3.69e-01 82.4% 14.1%
3802856 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 57.0 5.62e-01 74.5% 72.7%
3485981 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.81 68.0 4.66e-01 92.2% 82.4%
3189161 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.81 62.0 3.57e-01 82.4% 12.4%
3440258 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 55.0 5.84e-01 72.5% 84.4%
4061448 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.80 69.0 4.21e-01 94.1% 16.0%
3837286 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.80 70.0 5.74e-01 96.1% 88.9%
3389442 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.80 60.0 6.31e-01 80.4% 91.1%
3751898 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.80 62.0 5.64e-01 86.3% 98.6%
3675534 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.80 64.0 5.44e-01 86.3% 90.0%
3215203 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 56.0 6.10e-01 74.5% 95.0%
3191984 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 69.0 5.54e-01 100.0% 50.0%
3403122 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 57.0 6.21e-01 78.4% 97.5%
3803894 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 68.0 5.99e-01 96.1% 90.7%
3323668 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 62.0 5.48e-01 86.3% 98.7%
3219544 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.79 72.0 4.36e-01 100.0% 26.1%
3472858 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.79 62.0 5.50e-01 86.3% 95.9%
3525915 192.8.1.272 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › F-box 0.79 66.0 4.60e-01 92.2% 87.1%
3643181 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 62.0 5.46e-01 86.3% 90.7%
3355899 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 65.0 5.42e-01 90.2% 98.8%
3240954 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 55.0 5.97e-01 74.5% 95.0%
3216638 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 52.0 5.71e-01 70.6% 90.0%
None — 0.78 65.0 3.65e-01 92.2% 11.6%
3700301 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 58.0 5.93e-01 82.4% 92.0%
None — 0.77 64.0 3.49e-01 90.2% 5.9%
3470430 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.77 54.0 5.94e-01 74.5% 95.0%
3228181 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 57.0 5.97e-01 80.4% 91.1%
3886321 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 67.0 5.71e-01 96.1% 98.8%
3672250 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.77 69.0 4.59e-01 100.0% 26.8%
3728200 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 65.0 5.87e-01 96.1% 97.1%
3837673 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 53.0 5.60e-01 74.5% 88.9%
3724474 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.76 59.0 3.37e-01 84.3% 9.0%
3259075 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 63.0 5.42e-01 90.2% 62.8%
3399970 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.76 67.0 4.27e-01 100.0% 20.8%
3440863 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 55.0 6.00e-01 80.4% 100.0%
3491937 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 66.0 5.48e-01 98.0% 97.8%
3213262 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 65.0 5.16e-01 96.1% 66.0%
3271229 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 66.0 5.75e-01 96.1% 76.0%
3222836 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 51.0 5.50e-01 76.5% 92.5%
3539114 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.75 66.0 4.36e-01 100.0% 36.2%
3436290 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 66.0 6.12e-01 100.0% 100.0%
3208242 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 65.0 6.36e-01 100.0% 100.0%
3726637 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.74 65.0 3.83e-01 96.1% 38.6%
4160836 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 66.0 4.02e-01 100.0% 24.7%
3939710 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.74 66.0 6.07e-01 98.0% 84.6%
None — 0.74 62.0 3.59e-01 96.1% 10.5%
3477761 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 59.0 5.02e-01 90.2% 87.1%
3866275 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.74 62.0 3.63e-01 92.2% 14.2%
3463234 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.73 64.0 6.31e-01 100.0% 89.1%
3499495 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.73 59.0 3.45e-01 90.2% 12.3%
3740971 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 56.0 4.89e-01 90.2% 91.8%
3273645 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 56.0 4.90e-01 86.3% 97.5%
3355293 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 63.0 5.07e-01 100.0% 99.0%
3456290 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 62.0 5.59e-01 96.1% 100.0%
3484993 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.72 59.0 3.49e-01 92.2% 12.8%
4203110 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 49.0 5.15e-01 72.5% 84.4%
4012559 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 59.0 5.09e-01 98.0% 88.2%
3437176 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.71 64.0 6.07e-01 100.0% 86.7%
3791329 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 54.0 3.25e-01 86.3% 16.6%
3226289 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.70 48.0 5.17e-01 74.5% 95.0%
3193482 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 56.0 4.74e-01 96.1% 90.5%
3223353 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.69 48.0 5.12e-01 74.5% 95.0%
3230376 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 59.0 3.41e-01 98.0% 10.9%
3693613 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.69 58.0 3.30e-01 98.0% 13.7%
3907153 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.68 59.0 3.41e-01 98.0% 17.5%
3186415 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 60.0 5.03e-01 98.0% 95.3%
3876966 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.68 58.0 3.25e-01 98.0% 11.9%
3217456 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.68 46.0 4.97e-01 72.5% 95.0%
3491877 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.68 52.0 3.64e-01 86.3% 41.1%
3311308 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.67 56.0 3.28e-01 96.1% 11.4%
3465884 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.66 54.0 5.11e-01 96.1% 85.9%
3213163 2484.1.1.162 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › F-box 0.66 55.0 4.21e-01 100.0% 53.1%
3230101 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.65 55.0 3.91e-01 100.0% 62.4%
D2 medium residues 100-152
PDB