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F-box_domain_containing_protein
Euk-VirPandoravirus_quercus
F-box_domain_containing_protein__YP_009483738__Pandoravirus_quercus__2107709
Identity
- Accession:
- YP_009483738 ↗
- Protein ID:
- F-box_domain_containing_protein
- Kingdom:
- euk
Quality
66.3
mean pLDDT
Cluster
View cluster (16 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 37-80
Domain cluster:
rep: F-box_domain_protein__YP_009119150__Pandoravirus_inopinatum__1605721__D45-85_140-152
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12937.13 best | F-box-like | 44.8 | 1.10e-11 | 97.7% | 89.4% |
| PF00646.39 | F-box | 37.1 | 2.70e-09 | 88.6% | 88.4% |
D2
high
residues 305-432
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ospO02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.61 | 38.0 | 3.68e-01 | 100.0% | 54.1% |
| 1g2rA00 | 3.30.1230.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like | 0.57 | 38.0 | 4.38e-01 | 75.8% | 93.6% |
| 4wz9A04 | 1.25.50.20 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › | 0.52 | 40.0 | 2.99e-01 | 100.0% | 31.9% |
| 2gcjA01 | 2.30.29.150 | Mainly Beta › Roll › PH-domain like › | 0.51 | 33.0 | 3.28e-01 | 78.9% | 61.2% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.50 | 31.0 | 3.68e-01 | 74.2% | 94.0% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3952446 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.80 | 29.0 | 4.16e-01 | 75.0% | 69.2% |
| 3922383 | 79.1.1.27 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › MORN | 0.66 | 42.0 | 5.10e-01 | 96.1% | 96.5% |
| 3710981 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.66 | 41.0 | 4.09e-01 | 100.0% | 59.3% |
| 3699495 | 3523.1.1.4 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › MORN | 0.66 | 34.0 | 4.45e-01 | 76.6% | 91.4% |
| 3856697 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.65 | 40.0 | 4.42e-01 | 98.4% | 75.2% |
| 3932225 | 77.2.1.0 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N | 0.64 | 44.0 | 4.90e-01 | 99.2% | 89.0% |
| 3600402 | 77.2.1.0 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N | 0.64 | 40.0 | 2.82e-01 | 90.6% | 20.8% |
| 5023640 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.63 | 31.0 | 3.87e-01 | 86.7% | 75.9% |
| 4029170 | 77.2.1.0 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N | 0.63 | 40.0 | 4.47e-01 | 99.2% | 82.0% |
| 3434864 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.62 | 40.0 | 4.60e-01 | 87.5% | 87.4% |
| 4106800 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.62 | 39.0 | 4.44e-01 | 99.2% | 84.2% |
| 3350809 | 77.1.1.5 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN | 0.61 | 38.0 | 4.33e-01 | 98.4% | 83.2% |
| 3713105 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.59 | 42.0 | 3.53e-01 | 100.0% | 45.0% |
| 4932541 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.59 | 28.0 | 3.62e-01 | 82.8% | 79.5% |
| 3716096 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.58 | 43.0 | 4.28e-01 | 100.0% | 73.3% |
| 4024499 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.57 | 41.0 | 3.91e-01 | 100.0% | 63.3% |
| 3601903 | 77.2.1.0 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N | 0.57 | 41.0 | 3.78e-01 | 100.0% | 58.7% |
| 3167351 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.57 | 28.0 | 3.36e-01 | 82.0% | 68.2% |
| 8214 | 377.4.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › YlxR | 0.57 | 38.0 | 4.38e-01 | 75.8% | 93.6% |
| 3664331 | 77.3.1.3 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN | 0.56 | 40.0 | 4.11e-01 | 99.2% | 77.5% |
| 3706026 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.55 | 39.0 | 3.35e-01 | 100.0% | 45.9% |
| 3763479 | 77.3.1.3 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN | 0.54 | 42.0 | 3.34e-01 | 100.0% | 41.2% |
| 3376224 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.54 | 40.0 | 3.65e-01 | 100.0% | 57.7% |
| 3495981 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.53 | 38.0 | 3.56e-01 | 96.1% | 59.4% |
| 3308166 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.53 | 40.0 | 4.04e-01 | 100.0% | 77.7% |
| 3592336 | 77.2.1.0 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N | 0.53 | 38.0 | 3.90e-01 | 100.0% | 78.3% |
| 4027722 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.53 | 41.0 | 4.22e-01 | 100.0% | 84.8% |
| 3718320 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.52 | 40.0 | 3.03e-01 | 100.0% | 34.3% |
| 3597404 | 77.3.1.0 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain | 0.51 | 40.0 | 3.32e-01 | 100.0% | 47.1% |
| 3213455 | 109.4.1.139 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Hyccin | 0.51 | 46.0 | 3.46e-01 | 99.2% | 77.8% |
| 3594212 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.51 | 39.0 | 3.68e-01 | 100.0% | 65.6% |
| 3965131 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.50 | 34.0 | 3.94e-01 | 98.4% | 96.7% |
D3
medium
residues 122-161_174-272