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F-box_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

F-box_domain_containing_protein__YP_009483762__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483762 ↗
Protein ID:
F-box_domain_containing_protein
Kingdom:
euk

Quality

77.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 250-377
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009483259__Pandoravirus_quercus__2107709__D363-500
D2 medium residues 17-71
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00646.39 best F-box 22.1 1.60e-04 69.1% 74.4%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.87 56.0 6.56e-01 76.4% 97.4%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.76 60.0 4.91e-01 92.7% 47.0%
3ogkB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.76 48.0 5.25e-01 76.4% 85.4%
1x4oA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.68 57.0 5.19e-01 100.0% 78.2%
2jqtA00 1.20.1280.40 Mainly Alpha › Up-down Bundle › Monooxygenase › HHA 0.62 51.0 5.14e-01 98.2% 94.7%
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.61 51.0 4.93e-01 100.0% 100.0%
2chpA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 43.0 3.22e-01 80.0% 30.4%
4nlbA02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.58 48.0 4.14e-01 96.4% 57.4%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 39.0 3.21e-01 74.5% 86.8%
2ii2A02 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.57 44.0 4.37e-01 85.5% 82.8%
3uo2B02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.56 47.0 4.14e-01 96.4% 90.5%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 46.0 3.44e-01 100.0% 84.0%
6pw7A02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.54 43.0 4.04e-01 92.7% 76.1%
1eu8A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 42.0 2.90e-01 94.5% 57.6%
2p06B00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.50 42.0 3.68e-01 96.4% 76.1%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3422636 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.93 72.0 7.86e-01 87.3% 100.0%
3658277 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 71.0 6.93e-01 90.9% 78.3%
3451260 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 76.0 7.41e-01 100.0% 85.0%
3698257 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 77.0 6.73e-01 100.0% 65.0%
4012180 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 73.0 5.32e-01 100.0% 35.0%
3818741 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 74.0 7.25e-01 100.0% 85.0%
3423604 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 62.0 6.50e-01 83.6% 82.0%
3347634 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.87 59.0 6.51e-01 83.6% 86.7%
3428515 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 68.0 6.81e-01 89.1% 83.6%
3725732 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 74.0 6.46e-01 100.0% 63.7%
3837757 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 57.0 5.10e-01 81.8% 50.7%
3443633 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 72.0 6.98e-01 98.2% 83.3%
3408565 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 61.0 6.62e-01 83.6% 91.1%
3999567 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 70.0 5.87e-01 100.0% 54.4%
3324307 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.85 58.0 5.45e-01 83.6% 60.0%
3403835 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 68.0 5.85e-01 100.0% 56.5%
3916304 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 68.0 5.71e-01 100.0% 53.3%
3184851 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 66.0 5.69e-01 100.0% 56.5%
4012387 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 58.0 5.12e-01 83.6% 53.3%
3457731 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 66.0 5.80e-01 100.0% 60.0%
2860146 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 55.0 5.58e-01 78.2% 71.7%
2420136 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 54.0 5.57e-01 78.2% 71.7%
3204329 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 63.0 5.06e-01 90.9% 43.8%
4422459 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 57.0 5.20e-01 83.6% 57.1%
3730335 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 63.0 6.54e-01 89.1% 90.0%
3678716 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 65.0 5.97e-01 90.9% 67.1%
3443498 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 65.0 5.55e-01 90.9% 55.3%
3727179 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 56.0 6.09e-01 83.6% 88.9%
3299681 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 57.0 5.93e-01 85.5% 82.0%
3786936 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 60.0 5.30e-01 90.9% 56.2%
3370474 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 61.0 5.79e-01 96.4% 70.8%
3819371 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 62.0 6.29e-01 100.0% 85.5%
3434120 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 50.0 5.61e-01 74.5% 92.3%
3924438 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 62.0 6.23e-01 96.4% 85.5%
3685791 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 63.0 6.33e-01 94.5% 87.3%
3494629 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 59.0 6.08e-01 100.0% 94.0%
3439829 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 61.0 5.13e-01 100.0% 53.3%
3180622 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 54.0 5.63e-01 81.8% 84.0%
3464778 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 63.0 5.39e-01 96.4% 58.8%
3683657 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 57.0 4.97e-01 96.4% 54.1%
3422989 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.73 58.0 3.36e-01 85.5% 13.6%
3347793 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 62.0 5.65e-01 96.4% 93.3%
3437951 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.70 64.0 3.70e-01 100.0% 35.6%
3441758 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.69 63.0 3.77e-01 100.0% 36.3%
3833961 207.1.1.183 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_2, FBD, LRR_At5g56370 0.69 62.0 3.69e-01 100.0% 32.3%
3881666 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.66 50.0 4.62e-01 81.8% 64.3%
3319774 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 59.0 5.31e-01 100.0% 89.3%
3410351 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.65 47.0 4.79e-01 83.6% 80.0%
2834524 3444.1.1.0 ↗ alpha arrays › DP domain › DP domain › DP domain 0.61 41.0 3.86e-01 70.9% 56.9%
3807112 207.1.1.96 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1 0.61 52.0 3.10e-01 100.0% 28.3%
4284003 109.12.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal domain of Ku80 › C-terminal domain of Ku80 0.59 45.0 3.67e-01 90.9% 81.7%