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F-box_domain_containing_protein
Euk-VirPandoravirus_quercus
F-box_domain_containing_protein__YP_009483777__Pandoravirus_quercus__2107709
Identity
- Accession:
- YP_009483777 ↗
- Protein ID:
- F-box_domain_containing_protein
- Kingdom:
- euk
Quality
83.7
mean pLDDT
Cluster
View cluster (22 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 64-257
Domain cluster:
rep: F-box_domain_containing_protein__YP_009483016__Pandoravirus_quercus__2107709__D63-140_166-247
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.64 | 19.0 | 3.69e-01 | 73.7% | 92.9% |
| 1ospO01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.62 | 33.0 | 4.36e-01 | 94.3% | 93.3% |
| 2af5A02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.62 | 43.0 | 5.03e-01 | 71.1% | 100.0% |
| 1b9vA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.55 | 44.0 | 3.54e-01 | 85.6% | 94.1% |
| 1iucA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.54 | 47.0 | 4.00e-01 | 92.8% | 98.1% |
| 7dpyB01 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.54 | 24.0 | 3.61e-01 | 89.2% | 98.8% |
| 3cxbA01 | 3.30.2440.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein SifA fold › Secreted effector protein SifA | 0.54 | 31.0 | 4.05e-01 | 71.1% | 98.3% |
| 5tf2A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 43.0 | 3.63e-01 | 86.6% | 98.8% |
| 2oxgC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 23.0 | 2.99e-01 | 89.2% | 70.3% |
| 4azpA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 35.0 | 4.09e-01 | 94.3% | 96.3% |
| 1vyfA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 34.0 | 3.94e-01 | 83.0% | 94.8% |
| 1p6pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 32.0 | 3.89e-01 | 84.0% | 100.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3978651 | 241.13.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › Sif | 0.69 | 30.0 | 4.09e-01 | 76.3% | 76.2% |
| 4583801 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.67 | 49.0 | 4.48e-01 | 78.9% | 58.4% |
| 3393242 | 5.1.4.39 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 | 0.53 | 43.0 | 3.48e-01 | 87.6% | 92.4% |
| 3578232 | 77.3.1.4 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 | 0.52 | 44.0 | 4.20e-01 | 88.1% | 86.7% |
| 3288557 | 9.27.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › LpqH › LpqH › Myco_19_kDa | 0.52 | 30.0 | 3.68e-01 | 71.1% | 88.0% |
| 3979569 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 27.0 | 3.53e-01 | 71.6% | 89.1% |
| 4212192 | 4252.1.1.3 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DA_C | 0.50 | 37.0 | 3.60e-01 | 74.7% | 95.2% |
| 4225063 | 3840.1.1.2 ↗ | a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PerB | 0.50 | 29.0 | 3.76e-01 | 98.5% | 100.0% |
D2
medium
residues 311-380
Domain cluster:
rep: F-box_domain__YP_008438249__Pandoravirus_salinus__1349410__D282-354