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F-box_domain_protein
Euk-VirPandoravirus_inopinatum
F-box_domain_protein__YP_009119101__Pandoravirus_inopinatum__1605721
Identity
- Accession:
- YP_009119101 ↗
- Protein ID:
- F-box_domain_protein
- Kingdom:
- euk
Quality
57.6
mean pLDDT
Cluster
View cluster (22 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 44-138
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dpmA02 | 1.10.1020.10 | Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 | 0.51 | 30.0 | 2.93e-01 | 85.3% | 49.5% |
| 1x2nA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.50 | 22.0 | 2.70e-01 | 80.0% | 60.0% |
D2
medium
residues 139-249
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xklA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 37.0 | 3.31e-01 | 82.0% | 48.3% |
| 2ffsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 47.0 | 4.29e-01 | 88.3% | 76.6% |
| 3tfzB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 45.0 | 3.98e-01 | 88.3% | 77.6% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 45.0 | 4.11e-01 | 86.5% | 72.6% |
| 1dzkA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 41.0 | 3.70e-01 | 80.2% | 58.1% |
| 1vyfA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 42.0 | 3.91e-01 | 79.3% | 65.2% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.55 | 41.0 | 4.21e-01 | 80.2% | 82.1% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.54 | 40.0 | 3.64e-01 | 79.3% | 72.6% |
| 3ua3A03 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.54 | 39.0 | 3.24e-01 | 75.7% | 99.0% |
| 4wfvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 39.0 | 3.55e-01 | 80.2% | 55.6% |
| 3htyA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 34.0 | 3.63e-01 | 73.9% | 74.5% |
| 1e5pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 40.0 | 3.64e-01 | 80.2% | 59.1% |
| 1dxkA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 41.0 | 3.33e-01 | 82.9% | 82.4% |
| 2e3nA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 43.0 | 3.39e-01 | 88.3% | 61.9% |
| 2v73A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 41.0 | 3.51e-01 | 83.8% | 61.7% |
| 6nu7A01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 43.0 | 3.11e-01 | 91.9% | 55.1% |
| 3qf7A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 2.97e-01 | 82.9% | 40.1% |
| 3qkgA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 44.0 | 3.86e-01 | 93.7% | 91.5% |
| 2pcsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 44.0 | 3.98e-01 | 94.6% | 84.9% |
| 4oddA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 37.0 | 3.39e-01 | 79.3% | 57.0% |
| 2e5aA02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.50 | 34.0 | 3.72e-01 | 73.0% | 83.9% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.50 | 38.0 | 3.64e-01 | 81.1% | 93.9% |
| 2r55A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 42.0 | 3.49e-01 | 93.7% | 96.2% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3342794 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.70 | 33.0 | 3.69e-01 | 86.5% | 55.6% |
| 4679966 | 3894.1.1.5 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › MORN_DRC7 | 0.62 | 45.0 | 5.13e-01 | 75.7% | 100.0% |
| 3877591 | 77.3.1.5 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN_DRC7 | 0.62 | 53.0 | 3.96e-01 | 94.6% | 69.5% |
| 3393795 | 77.1.1.3 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_DRC7 | 0.60 | 50.0 | 3.82e-01 | 95.5% | 38.5% |
| 3739310 | 3321.1.1.1 ↗ | a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander | 0.59 | 49.0 | 4.34e-01 | 89.2% | 90.0% |
| 3538630 | 77.3.1.5 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN_DRC7 | 0.59 | 55.0 | 4.04e-01 | 100.0% | 45.1% |
| 3495079 | 77.3.1.5 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN_DRC7 | 0.59 | 54.0 | 4.05e-01 | 100.0% | 47.9% |
| 4558296 | 77.1.1.3 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_DRC7 | 0.58 | 54.0 | 3.99e-01 | 100.0% | 44.4% |
| 3959610 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.56 | 45.0 | 4.28e-01 | 85.6% | 76.7% |
| 4046583 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.56 | 42.0 | 3.97e-01 | 78.4% | 66.2% |
| 3420606 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.55 | 44.0 | 3.11e-01 | 88.3% | 26.5% |
| 4668044 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.55 | 41.0 | 3.91e-01 | 80.2% | 65.4% |
| 3892746 | 5.1.4.13 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP | 0.55 | 48.0 | 3.36e-01 | 99.1% | 59.0% |
| 1063578 | 9.2.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin | 0.55 | 41.0 | 4.23e-01 | 80.2% | 82.1% |
| 3288021 | 2008.6.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains | 0.53 | 43.0 | 3.67e-01 | 86.5% | 95.6% |
| 5010078 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 44.0 | 3.10e-01 | 92.8% | 49.7% |
| 5038973 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 47.0 | 3.28e-01 | 99.1% | 52.7% |
| 4941519 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 46.0 | 3.16e-01 | 99.1% | 50.1% |
| 3937921 | 5.1.3.170 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_IFT140_2nd | 0.52 | 46.0 | 3.33e-01 | 100.0% | 61.8% |
| 1806527 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.52 | 41.0 | 3.65e-01 | 85.6% | 71.0% |
| 5054861 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.52 | 41.0 | 2.68e-01 | 82.9% | 24.7% |
| 3833570 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.51 | 41.0 | 3.31e-01 | 89.2% | 43.3% |
| 3616668 | 5.1.4.56 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NUP214 | 0.51 | 44.0 | 3.05e-01 | 96.4% | 41.0% |
| 3993370 | 5.1.3.25 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid | 0.51 | 41.0 | 3.02e-01 | 85.6% | 41.0% |
| 5036807 | 3111.1.1.0 ↗ | beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain | 0.51 | 33.0 | 3.51e-01 | 73.0% | 75.8% |
| 3745663 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.51 | 39.0 | 3.36e-01 | 81.1% | 52.0% |
| 3724602 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.51 | 45.0 | 3.17e-01 | 99.1% | 61.9% |