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F-box_domain_protein

Euk-Vir

Pandoravirus_inopinatum

F-box_domain_protein__YP_009119150__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009119150 ↗
Protein ID:
F-box_domain_protein
Kingdom:
euk

Quality

64.6 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_inopinatum

TaxID: 1605721

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 45-85_140-152
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 30.2 4.20e-07 72.2% 74.5%
PF00646.39 F-box 23.5 5.50e-05 66.7% 79.1%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.83 74.0 6.29e-01 100.0% 89.8%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.82 72.0 5.92e-01 100.0% 80.8%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.80 70.0 6.00e-01 100.0% 65.5%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.73 63.0 3.94e-01 92.6% 27.0%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 49.0 4.63e-01 90.7% 96.9%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.60 52.0 3.71e-01 100.0% 49.4%
2x6hA01 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.58 47.0 3.27e-01 90.7% 38.7%
4a17U01 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 48.0 4.29e-01 94.4% 89.6%
1e6vA03 1.20.840.10 Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal 0.57 45.0 3.08e-01 94.4% 40.4%
2yxyA01 1.10.287.880 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Hypothetical protein YfhH domain 0.55 40.0 4.17e-01 77.8% 96.0%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.54 37.0 3.40e-01 85.2% 51.9%
ECOD (92)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3209791 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.95 69.0 6.42e-01 75.9% 63.1%
3439461 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 85.0 7.88e-01 96.3% 90.8%
3781279 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 87.0 7.45e-01 100.0% 90.0%
3358453 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 87.0 7.82e-01 100.0% 88.6%
3522358 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 85.0 7.54e-01 100.0% 86.7%
3428197 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.92 85.0 7.33e-01 100.0% 95.0%
3623404 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 84.0 6.39e-01 100.0% 76.5%
3186415 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 84.0 7.09e-01 100.0% 89.4%
3806475 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 82.0 7.28e-01 98.1% 84.0%
3301883 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 82.0 7.10e-01 98.1% 91.3%
3726245 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 62.0 6.49e-01 96.3% 78.0%
3810074 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.90 82.0 7.16e-01 100.0% 81.0%
3472074 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 79.0 6.39e-01 94.4% 69.5%
3250247 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 80.0 7.69e-01 100.0% 86.7%
3547224 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 70.0 5.94e-01 83.3% 68.2%
3385347 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.90 77.0 6.74e-01 94.4% 91.1%
3652521 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 76.0 6.84e-01 92.6% 89.0%
4021336 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 65.0 6.23e-01 75.9% 68.3%
3248494 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 81.0 7.57e-01 100.0% 92.3%
3738910 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 81.0 6.87e-01 100.0% 80.0%
3443639 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.89 65.0 6.78e-01 94.4% 84.0%
3729172 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 80.0 6.26e-01 100.0% 84.5%
4019682 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 80.0 6.56e-01 100.0% 85.3%
3698023 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 80.0 6.18e-01 100.0% 77.4%
4023603 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 73.0 6.64e-01 88.9% 84.3%
4545458 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 79.0 6.40e-01 100.0% 85.0%
3742900 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 79.0 5.82e-01 100.0% 83.7%
3204462 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 79.0 5.96e-01 100.0% 82.4%
3595717 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.88 80.0 7.48e-01 100.0% 95.4%
3259869 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 79.0 6.76e-01 100.0% 87.1%
3644704 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 80.0 6.80e-01 100.0% 87.1%
3685535 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 78.0 6.84e-01 100.0% 92.5%
3446267 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 63.0 6.27e-01 75.9% 76.4%
3257387 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 79.0 6.73e-01 100.0% 80.0%
3443890 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 61.0 6.64e-01 74.1% 88.9%
3256545 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 65.0 6.09e-01 79.6% 84.6%
3194125 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 79.0 6.86e-01 100.0% 90.0%
4023099 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 79.0 6.08e-01 100.0% 80.0%
3740971 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 77.0 6.63e-01 100.0% 84.7%
3451260 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 62.0 6.00e-01 75.9% 68.3%
3348915 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 78.0 6.10e-01 100.0% 78.2%
3696138 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 77.0 6.34e-01 100.0% 83.2%
3201568 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 76.0 6.98e-01 100.0% 81.4%
3466887 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 61.0 6.35e-01 75.9% 82.0%
3407033 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 77.0 6.87e-01 100.0% 90.7%
3762363 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 77.0 4.33e-01 100.0% 12.2%
3609228 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 73.0 6.63e-01 92.6% 85.7%
3631167 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 76.0 6.51e-01 100.0% 88.2%
3821430 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 75.0 6.59e-01 100.0% 83.7%
3861026 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 76.0 6.22e-01 100.0% 71.4%
3613821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 76.0 6.94e-01 100.0% 88.6%
4013644 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 75.0 6.30e-01 100.0% 88.9%
3726578 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 74.0 6.38e-01 100.0% 81.2%
3355293 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 74.0 6.04e-01 100.0% 88.0%
3257162 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 73.0 5.91e-01 100.0% 62.9%
3833527 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 71.0 6.87e-01 98.1% 85.0%
3225722 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 73.0 5.67e-01 98.1% 91.3%
4500280 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 75.0 6.41e-01 100.0% 78.8%
3821483 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 57.0 6.46e-01 74.1% 97.5%
3425357 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 69.0 6.17e-01 94.4% 88.5%
3446581 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 73.0 6.28e-01 100.0% 90.6%
3601442 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 69.0 6.53e-01 92.6% 98.5%
3344543 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 73.0 6.30e-01 100.0% 87.1%
3429995 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 68.0 6.18e-01 92.6% 79.5%
3909942 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 71.0 5.68e-01 100.0% 60.9%
3648014 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 70.0 6.30e-01 96.3% 94.7%
3273645 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 72.0 6.28e-01 98.1% 90.0%
3363836 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 71.0 6.15e-01 100.0% 88.2%
3276040 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 74.0 6.75e-01 100.0% 81.4%
3819291 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 58.0 5.80e-01 75.9% 76.4%
3811862 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.80 56.0 5.82e-01 74.1% 80.0%
3664817 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 71.0 6.21e-01 100.0% 92.5%
3826054 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.80 60.0 6.03e-01 96.3% 80.0%
3829887 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.80 57.0 5.71e-01 75.9% 78.2%
3235397 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 60.0 5.87e-01 83.3% 86.7%
3312720 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.80 68.0 6.07e-01 94.4% 90.7%
3337545 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 69.0 6.51e-01 98.1% 93.8%
3191118 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 69.0 5.61e-01 100.0% 62.1%
3355899 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 68.0 5.93e-01 100.0% 92.9%
3320433 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 63.0 6.14e-01 88.9% 95.0%
3643181 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 68.0 6.12e-01 100.0% 86.7%
3300009 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 68.0 6.00e-01 100.0% 87.5%
3731690 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 68.0 5.96e-01 98.1% 90.0%
3380116 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 63.0 5.89e-01 90.7% 85.3%
3257315 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 66.0 6.08e-01 100.0% 94.3%
3818741 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 63.0 6.07e-01 100.0% 81.7%
3552610 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 67.0 6.02e-01 100.0% 89.2%
3668652 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 64.0 5.81e-01 98.1% 89.3%
3469709 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 67.0 5.68e-01 98.1% 96.5%
3810025 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 63.0 5.81e-01 100.0% 74.3%
3726268 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 62.0 5.31e-01 100.0% 93.3%
3456664 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 56.0 5.58e-01 94.4% 85.5%
D2 medium residues 325-442
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009483738__Pandoravirus_quercus__2107709__D305-432