←Back to structures

F-box_domain_protein

Euk-Vir

Pandoravirus_inopinatum

F-box_domain_protein__YP_009119402__Pandoravirus_inopinatum__1605721

Identity

Accession:: YP_009119402 ↗
Protein ID:: F-box_domain_protein
Kingdom:: euk

Quality

66.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_inopinatum

TaxID: 1605721

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 14-78

PDB

Domain cluster: rep: F-box_incomplete_domain_containing_protein__YP_008318724__Pandoravirus_dulcis__1349409__D16-76

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12937.13 best	F-box-like	29.7	6.00e-07	78.5%	76.6%
PF00646.39	F-box	20.6	4.40e-04	47.7%	60.5%

D2 medium residues 220-283

PDB

Domain cluster: representative

CATH (23)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7yh2B01	3.30.1380.20	Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3	0.70	60.0	4.60e-01	96.9%	86.7%
3cueB00	3.30.1380.20	Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3	0.68	59.0	4.42e-01	100.0%	77.2%
2qgsB01	1.10.472.50	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like	0.67	45.0	4.10e-01	70.3%	54.5%
5kjpA02	1.10.12.10	Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2	0.67	44.0	4.61e-01	75.0%	75.9%
2nr4A02	1.20.58.290	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121.	0.66	48.0	4.96e-01	84.4%	84.5%
1chuA03	1.20.58.100	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain	0.66	54.0	4.93e-01	92.2%	75.0%
3k1rA01	1.20.1160.20	Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) ›	0.65	41.0	3.90e-01	85.9%	50.6%
6ynwH01	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.65	44.0	4.28e-01	71.9%	63.5%
3ecsC01	1.20.120.1070	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain	0.65	54.0	4.76e-01	96.9%	95.0%
1hr6B02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.64	53.0	3.73e-01	92.2%	89.4%
2j4bB00	1.25.40.500	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain	0.64	54.0	4.39e-01	98.4%	68.4%
1yxrA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.64	51.0	4.94e-01	89.1%	79.7%
3uj9A00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.61	49.0	3.34e-01	92.2%	88.4%
1kvkA02	3.30.70.890	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain	0.61	46.0	3.53e-01	82.8%	65.5%
2cazE00	1.20.1440.200	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Vps28 N-terminal domain	0.60	49.0	4.25e-01	90.6%	79.2%
3pubA01	1.10.10.2400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain	0.60	48.0	4.67e-01	95.3%	79.7%
1j5wA02	1.20.58.180	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2	0.59	45.0	4.28e-01	84.4%	72.7%
1sumB02	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.59	51.0	4.22e-01	100.0%	85.6%
6s8bA01	1.10.520.30	Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain	0.59	45.0	3.57e-01	87.5%	96.6%
5dn6J00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.58	38.0	3.67e-01	71.9%	58.1%
1dk8A02	1.10.167.10	Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2	0.55	48.0	4.40e-01	100.0%	75.3%
1a36A04	1.10.132.10	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 ›	0.53	41.0	3.14e-01	90.6%	85.7%
2jnsA01	1.20.1270.220	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.53	37.0	3.47e-01	75.0%	65.4%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3935505	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.69	53.0	4.86e-01	87.5%	63.5%
3824324	109.4.1.17 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin	0.69	59.0	3.96e-01	96.9%	69.8%
3499876	574.1.1.0 ↗	alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain)	0.69	43.0	4.16e-01	89.1%	54.7%
4939150	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.66	51.0	4.90e-01	92.2%	72.0%
3731082	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.62	50.0	4.79e-01	89.1%	77.3%
4325839	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.62	44.0	4.35e-01	78.1%	72.9%

D3 medium residues 284-360

PDB

D4 medium residues 361-448

PDB

Domain cluster: rep: F-box_domain_containing_protein__YP_009483581__Pandoravirus_quercus__2107709__D363-462

D5 medium residues 449-568

PDB