←Back to structures
F-box_domain_protein
Euk-VirPandoravirus_inopinatum
F-box_domain_protein__YP_009119627__Pandoravirus_inopinatum__1605721
Identity
- Accession:
- YP_009119627 ↗
- Protein ID:
- F-box_domain_protein
- Kingdom:
- euk
Quality
64.1
mean pLDDT
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 49-135
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fewA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 51.0 | 4.02e-01 | 78.2% | 62.4% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.68 | 49.0 | 4.20e-01 | 75.9% | 98.6% |
| 2vxgA02 | 1.10.220.100 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 | 0.66 | 55.0 | 5.61e-01 | 94.3% | 92.9% |
| 4nuuB02 | 1.20.58.830 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 46.0 | 4.11e-01 | 73.6% | 78.9% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.64 | 45.0 | 4.22e-01 | 72.4% | 90.7% |
| 2hkuB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 55.0 | 4.32e-01 | 95.4% | 88.6% |
| 3o4zA02 | 1.25.40.720 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tel2 C-terminal domain | 0.63 | 55.0 | 4.34e-01 | 100.0% | 61.9% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.63 | 45.0 | 4.43e-01 | 77.0% | 81.4% |
| 1s2xA00 | 1.20.190.30 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › CAG pathogenicity island protein, CagZ | 0.63 | 47.0 | 3.76e-01 | 80.5% | 87.2% |
| 3w0oA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.62 | 54.0 | 4.07e-01 | 100.0% | 84.9% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 39.0 | 4.36e-01 | 85.1% | 88.5% |
| 2g7sA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 52.0 | 4.06e-01 | 93.1% | 92.1% |
| 1li5A02 | 1.20.120.640 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.61 | 39.0 | 3.98e-01 | 83.9% | 65.5% |
| 4l9mA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.60 | 51.0 | 4.52e-01 | 96.6% | 78.2% |
| 1upkA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.60 | 52.0 | 3.63e-01 | 100.0% | 42.5% |
| 1x5bA01 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 52.0 | 4.55e-01 | 100.0% | 86.7% |
| 3tp3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 49.0 | 4.13e-01 | 89.7% | 90.5% |
| 4o6mA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.59 | 52.0 | 4.07e-01 | 100.0% | 88.2% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 44.0 | 3.83e-01 | 79.3% | 82.6% |
| 4an8A02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.59 | 48.0 | 4.30e-01 | 87.4% | 86.1% |
| 1z9eA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.59 | 43.0 | 4.45e-01 | 88.5% | 81.9% |
| 3crjC00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 50.0 | 4.00e-01 | 95.4% | 93.3% |
| 4kwaB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 49.0 | 3.83e-01 | 93.1% | 78.1% |
| 3qkyA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 48.0 | 3.56e-01 | 96.6% | 47.8% |
| 5cwkA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 50.0 | 4.08e-01 | 98.9% | 70.8% |
| 2ondA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 49.0 | 3.44e-01 | 100.0% | 35.4% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 42.0 | 4.30e-01 | 81.6% | 80.0% |
| 2katA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 43.0 | 3.95e-01 | 96.6% | 62.6% |
| 1t90A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.56 | 39.0 | 2.74e-01 | 72.4% | 44.6% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.56 | 41.0 | 4.43e-01 | 83.9% | 90.7% |
| 2f3oA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.55 | 48.0 | 2.83e-01 | 100.0% | 26.3% |
| 5an3A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 47.0 | 4.19e-01 | 98.9% | 77.5% |
| 4jhrB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 48.0 | 3.35e-01 | 100.0% | 46.7% |
| 1sxjD03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.54 | 42.0 | 4.20e-01 | 86.2% | 82.4% |
| 6cnzF00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.54 | 43.0 | 3.56e-01 | 87.4% | 64.6% |
| 1fs2A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.53 | 49.0 | 3.46e-01 | 100.0% | 40.2% |
| 2vxxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 45.0 | 3.60e-01 | 92.0% | 69.2% |
| 4rg9B04 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 38.0 | 3.77e-01 | 96.6% | 69.8% |
| 1uzbA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.53 | 40.0 | 2.78e-01 | 96.6% | 22.1% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 35.0 | 3.45e-01 | 70.1% | 94.9% |
| 3beeA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 40.0 | 3.99e-01 | 97.7% | 79.1% |
| 1xx7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.51 | 44.0 | 3.55e-01 | 95.4% | 95.3% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3299099 | 109.4.1.414 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS19_N | 0.71 | 63.0 | 4.15e-01 | 97.7% | 82.5% |
| 3992194 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 60.0 | 3.87e-01 | 100.0% | 43.2% |
| 3632331 | 109.4.1.299 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ltn1_1st | 0.68 | 60.0 | 3.41e-01 | 100.0% | 13.5% |
| 3552989 | 604.8.1.1 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo › Smac_DIABLO | 0.67 | 47.0 | 3.73e-01 | 74.7% | 68.5% |
| 3234622 | 109.4.1.649 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4807 | 0.66 | 47.0 | 4.39e-01 | 74.7% | 96.4% |
| None | — | 0.66 | 49.0 | 2.87e-01 | 75.9% | 95.0% | |
| 4825023 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.66 | 60.0 | 4.56e-01 | 100.0% | 84.1% |
| 3246645 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 57.0 | 4.31e-01 | 97.7% | 55.9% |
| 3809587 | 109.4.1.1742 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_CPL3 | 0.66 | 54.0 | 4.69e-01 | 90.8% | 80.7% |
| 3713076 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 48.0 | 4.04e-01 | 78.2% | 49.3% |
| 3342169 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 56.0 | 4.14e-01 | 100.0% | 65.4% |
| 3718055 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 54.0 | 3.84e-01 | 97.7% | 55.2% |
| 3332671 | 109.4.1.31 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3 | 0.61 | 53.0 | 4.32e-01 | 100.0% | 67.4% |
| 1304876 | 191.1.1.41 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › EthR_C | 0.61 | 50.0 | 4.28e-01 | 88.5% | 96.4% |
| 4614 | 109.4.1.225 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GUN4_N | 0.61 | 46.0 | 4.73e-01 | 97.7% | 86.6% |
| 3260760 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 54.0 | 4.22e-01 | 100.0% | 55.3% |
| 3357886 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.61 | 43.0 | 3.40e-01 | 77.0% | 35.6% |
| 3236656 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.60 | 50.0 | 4.39e-01 | 95.4% | 89.3% |
| 3270155 | 109.4.1.3291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_HEAT, PF26779 | 0.60 | 52.0 | 3.06e-01 | 100.0% | 24.1% |
| 3442643 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.59 | 50.0 | 2.97e-01 | 89.7% | 94.2% |
| 3326022 | 3004.1.1.0 ↗ | alpha bundles › Hypothetical protein YfhH, N-terminal domain › Hypothetical protein YfhH, N-terminal domain › Hypothetical protein YfhH, N-terminal domain | 0.59 | 46.0 | 4.84e-01 | 96.6% | 90.0% |
| 3387127 | 109.4.1.206 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › YfiO | 0.59 | 49.0 | 3.88e-01 | 92.0% | 56.2% |
| 3663421 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 51.0 | 3.13e-01 | 97.7% | 24.2% |
| 5003426 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 50.0 | 4.58e-01 | 97.7% | 84.3% |
| 1148735 | 109.4.1.1919 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_16, YfiO | 0.57 | 48.0 | 3.56e-01 | 96.6% | 47.8% |
| 4170864 | 109.4.1.1919 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_16, YfiO | 0.57 | 49.0 | 3.68e-01 | 96.6% | 50.0% |
| 3839870 | 109.4.1.206 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › YfiO | 0.56 | 49.0 | 3.67e-01 | 96.6% | 47.3% |
| 3185724 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.55 | 47.0 | 3.00e-01 | 100.0% | 24.3% |
| 3171073 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.54 | 45.0 | 4.05e-01 | 95.4% | 66.1% |