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F-box_domain_protein

Euk-Vir

Pandoravirus_inopinatum

F-box_domain_protein__YP_009119666__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009119666 ↗
Protein ID:
F-box_domain_protein
Kingdom:
euk

Quality

68.4 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_inopinatum

TaxID: 1605721

Cluster

View cluster (32 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-62
PDB
Domain cluster: rep: F-box_domain_protein__YP_009119184__Pandoravirus_inopinatum__1605721__D1-51
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 36.9 3.40e-09 88.2% 89.4%
PF00646.39 F-box 21.0 3.40e-04 80.4% 90.7%
D2 medium residues 63-125
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.55 44.0 4.23e-01 95.2% 97.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3985403 5041.1.1.0 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.54 42.0 3.97e-01 88.9% 95.0%
D3 medium residues 126-308
PDB
Domain cluster: rep: morn_repeat_domain__YP_008437177__Pandoravirus_salinus__1349410__D172-314
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3700096 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.90 46.0 6.40e-01 74.9% 94.0%
3606666 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.86 47.0 5.66e-01 83.6% 76.9%
3475267 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.86 46.0 6.45e-01 76.5% 100.0%
3709361 3523.1.1.4 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › MORN 0.85 47.0 5.98e-01 79.2% 87.8%
3311784 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.85 46.0 5.61e-01 80.9% 79.2%
3501309 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.85 49.0 5.59e-01 88.5% 75.0%
3598356 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.84 48.0 6.46e-01 85.2% 100.0%
3719689 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.83 43.0 6.15e-01 72.7% 100.0%
3629117 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.83 46.0 5.15e-01 84.7% 68.0%
3388896 79.1.1.27 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › MORN 0.83 53.0 5.86e-01 88.5% 78.7%
3858437 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.82 50.0 4.92e-01 86.9% 57.9%
3601199 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.81 47.0 5.81e-01 79.2% 88.3%
3720040 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.81 37.0 4.88e-01 88.0% 75.5%
3772650 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.80 45.0 5.58e-01 82.5% 85.0%
4030530 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.79 47.0 5.79e-01 95.6% 90.0%
3591310 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.79 50.0 5.97e-01 87.4% 90.0%
4003791 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.78 48.0 4.92e-01 87.4% 62.8%
3268625 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.78 51.0 4.67e-01 88.5% 52.9%
3610069 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.78 50.0 4.72e-01 88.0% 55.3%
3607875 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.77 48.0 5.64e-01 86.9% 85.2%
4030599 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.76 50.0 5.64e-01 97.3% 84.6%
3713206 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.76 50.0 5.89e-01 90.2% 91.1%
3972271 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.76 51.0 4.32e-01 88.5% 45.1%
3611128 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.75 50.0 3.54e-01 88.5% 24.7%
3708838 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.75 50.0 5.57e-01 88.5% 82.0%
3591199 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.75 39.0 4.94e-01 84.7% 81.7%
3718645 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.74 52.0 5.82e-01 88.0% 89.0%
3708791 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.74 49.0 4.70e-01 89.6% 59.0%
3719416 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.74 49.0 5.65e-01 88.0% 88.5%
4029687 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.73 42.0 5.02e-01 85.2% 80.8%
3575459 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.73 51.0 5.69e-01 80.3% 87.3%
3716096 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.72 44.0 5.16e-01 85.8% 83.0%
3718320 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.72 47.0 3.88e-01 77.0% 40.3%
3614805 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.71 54.0 4.67e-01 90.2% 53.6%
3531694 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.70 52.0 4.51e-01 88.5% 52.7%
3712317 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.70 47.0 5.02e-01 85.2% 77.5%
3875250 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.69 51.0 5.38e-01 88.5% 83.0%
3763479 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.69 51.0 4.47e-01 88.5% 53.7%
4308299 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.69 51.0 5.69e-01 90.2% 94.5%
3600402 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.68 51.0 3.88e-01 89.1% 36.2%
3713105 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.67 45.0 4.31e-01 89.6% 58.9%
3593136 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.65 50.0 5.19e-01 87.4% 82.9%
3611492 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.65 50.0 4.31e-01 90.7% 53.3%
3605869 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.65 52.0 4.54e-01 88.0% 58.1%
3253682 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.65 45.0 4.99e-01 88.0% 86.7%
3719280 3523.1.1.4 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › MORN 0.63 55.0 3.68e-01 97.8% 26.6%
4030717 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.60 38.0 3.97e-01 89.1% 67.6%
3715243 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.60 42.0 4.93e-01 80.9% 100.0%
3712316 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.59 52.0 4.50e-01 90.7% 67.3%
3919375 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.58 32.0 4.30e-01 73.2% 100.0%
3587744 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.55 29.0 3.30e-01 97.3% 65.0%
D4 medium residues 309-379
PDB
D5 medium residues 380-442_454-477
PDB
D6 medium residues 478-531
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.75 51.0 5.33e-01 70.4% 81.2%
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.74 50.0 5.20e-01 70.4% 87.5%
3d1uA03 1.20.1270.240 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.73 49.0 3.95e-01 72.2% 36.6%
2wj9B00 3.30.70.3580 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Antirestriction protein 0.73 58.0 4.25e-01 88.9% 68.3%
1ea0A04 2.160.20.60 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Glutamate synthase, alpha subunit, C-terminal domain 0.68 56.0 3.64e-01 96.3% 80.3%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 54.0 3.64e-01 92.6% 32.9%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 54.0 4.36e-01 90.7% 87.3%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.66 45.0 4.15e-01 70.4% 78.9%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.66 45.0 4.50e-01 74.1% 80.4%
1dceA01 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.65 54.0 3.43e-01 100.0% 49.8%
4uijA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.63 52.0 4.30e-01 98.1% 99.0%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.62 43.0 4.13e-01 74.1% 70.8%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.62 42.0 3.87e-01 72.2% 56.6%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.58 42.0 3.54e-01 83.3% 63.3%
4id9A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 46.0 3.22e-01 98.1% 55.0%
1c0pA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 47.0 3.26e-01 94.4% 69.8%
6v88A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.56 45.0 3.73e-01 98.1% 99.1%
4ksaA02 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.56 43.0 3.37e-01 88.9% 94.2%
1a59A02 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.54 41.0 3.42e-01 88.9% 78.7%
3fw8A02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.53 41.0 2.91e-01 94.4% 82.9%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.52 42.0 3.08e-01 94.4% 30.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3220585 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.80 53.0 5.32e-01 72.2% 67.3%
4532371 192.6.1.1 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE 0.70 48.0 4.95e-01 72.2% 84.0%
5057512 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.70 52.0 4.91e-01 81.5% 84.6%
3817483 207.7.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C › GXGXG 0.69 58.0 3.68e-01 96.3% 74.5%
2712165 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.68 46.0 4.87e-01 70.4% 93.3%
4946663 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 59.0 4.47e-01 100.0% 80.7%
4080847 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.68 52.0 4.89e-01 87.0% 82.9%
4654098 207.7.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C › GXGXG 0.68 56.0 3.63e-01 96.3% 78.5%
4929743 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 3.90e-01 92.6% 77.3%
3683831 207.7.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C › GXGXG 0.66 55.0 3.73e-01 96.3% 78.1%
4967419 3930.1.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.62 50.0 3.96e-01 100.0% 53.3%
3399791 7015.1.1.2 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › XK-related 0.62 50.0 3.19e-01 98.1% 57.6%
4936909 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 50.0 3.58e-01 96.3% 48.3%
4089556 7575.1.1.6 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C80 0.61 47.0 3.02e-01 88.9% 24.4%
3368917 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.60 48.0 3.64e-01 92.6% 41.4%
3335640 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 46.0 4.46e-01 92.6% 95.4%
3974694 304.111.1.0 ↗ a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like 0.59 47.0 3.26e-01 92.6% 76.6%
552 4.1.1.61 ↗ beta barrels › SH3 › SH3 › SH3 › KapB 0.58 42.0 3.54e-01 83.3% 63.3%
4442768 375.10.1.2 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.58 37.0 3.55e-01 74.1% 52.3%