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F-box_domain_protein
Euk-VirPandoravirus_inopinatum
F-box_domain_protein__YP_009119913__Pandoravirus_inopinatum__1605721
Identity
- Accession:
- YP_009119913 ↗
- Protein ID:
- F-box_domain_protein
- Kingdom:
- euk
Quality
74.2
mean pLDDT
Cluster
View cluster (32 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 90-297
Domain cluster:
rep: F-box_domain_containing_protein__YP_009483832__Pandoravirus_quercus__2107709__D62-270
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030440 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.68 | 33.0 | 3.09e-01 | 72.1% | 37.3% |
| 4098591 | 243.3.1.7 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Xylo_C | 0.54 | 25.0 | 3.42e-01 | 93.3% | 86.0% |
| 4891029 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.52 | 38.0 | 3.70e-01 | 100.0% | 67.1% |
D2
medium
residues 458-574
Domain cluster:
rep: F-box_domain_protein__YP_009119358__Pandoravirus_inopinatum__1605721__D405-432_466-524
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4od8D00 | 6.10.140.1880 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 25.0 | 3.51e-01 | 85.5% | 92.2% |
| 3fxdC00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.56 | 21.0 | 3.09e-01 | 75.2% | 78.0% |
| 1iygA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 38.0 | 3.68e-01 | 100.0% | 67.7% |
| 5fqdC01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 26.0 | 3.26e-01 | 89.7% | 84.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3595149 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.57 | 26.0 | 3.50e-01 | 78.6% | 83.3% |
| 3911774 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 43.0 | 3.17e-01 | 86.3% | 59.1% |
| 3520880 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.50 | 43.0 | 2.67e-01 | 95.7% | 70.9% |