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F-box_domain_protein

Euk-Vir

Pandoravirus_inopinatum

F-box_domain_protein__YP_009119927__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009119927 ↗
Protein ID:
F-box_domain_protein
Kingdom:
euk

Quality

66.3 mean pLDDT

Taxonomy

TaxID: 1605721

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 59-105
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 27.0 4.40e-06 91.5% 89.4%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i6jB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.87 64.0 6.75e-01 78.7% 88.1%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.87 70.0 4.29e-01 89.4% 15.8%
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.87 63.0 6.87e-01 78.7% 94.7%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.87 77.0 6.24e-01 100.0% 54.5%
3ogkB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.83 57.0 6.02e-01 78.7% 82.9%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.83 69.0 5.69e-01 95.7% 51.7%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.83 72.0 5.68e-01 100.0% 52.5%
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.82 63.0 6.39e-01 85.1% 84.8%
2e31A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.80 67.0 6.23e-01 97.9% 79.0%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.79 66.0 5.24e-01 97.9% 49.0%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.68 52.0 3.62e-01 87.2% 24.7%
4c0dC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.65 49.0 3.55e-01 87.2% 28.2%
3d5lA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.71e-01 83.0% 100.0%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 50.0 4.05e-01 100.0% 61.6%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 49.0 2.83e-01 89.4% 30.7%
4h59A02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.59 39.0 2.77e-01 100.0% 19.3%
1g4uS01 1.20.120.260 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain 0.58 47.0 3.48e-01 93.6% 33.9%
6v88A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.58 43.0 3.38e-01 87.2% 79.3%
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.56 35.0 3.03e-01 74.5% 38.5%
6q9jB02 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.56 40.0 3.48e-01 85.1% 96.6%
1f2eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 41.0 3.34e-01 100.0% 69.8%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3348915 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.96 87.0 6.41e-01 97.9% 41.8%
3524044 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.95 73.0 7.48e-01 80.9% 84.4%
3730054 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.95 88.0 7.58e-01 100.0% 67.1%
3472074 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.95 86.0 6.65e-01 97.9% 48.4%
3660193 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.95 78.0 7.64e-01 87.2% 82.0%
3886321 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.95 87.0 7.05e-01 97.9% 57.5%
3321220 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.95 71.0 7.59e-01 78.7% 92.5%
3261282 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 85.0 8.07e-01 97.9% 83.6%
3711287 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.94 83.0 6.25e-01 95.7% 43.3%
3861026 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 85.0 6.52e-01 97.9% 48.0%
3407033 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 85.0 7.10e-01 97.9% 62.7%
3876177 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 74.0 6.17e-01 93.6% 53.3%
4000706 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.92 70.0 6.92e-01 80.9% 76.0%
3802856 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.92 83.0 7.86e-01 100.0% 85.5%
3547224 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 82.0 6.63e-01 97.9% 55.3%
3250247 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 80.0 7.31e-01 95.7% 75.0%
3664299 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 83.0 6.45e-01 100.0% 49.5%
3730967 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 82.0 6.22e-01 100.0% 45.7%
3770072 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 83.0 6.54e-01 100.0% 52.2%
3250931 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 82.0 6.86e-01 97.9% 62.7%
3903969 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 81.0 6.39e-01 97.9% 52.2%
3209791 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 82.0 7.22e-01 97.9% 72.3%
3758711 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 67.0 7.15e-01 78.7% 92.5%
3420610 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.90 81.0 7.69e-01 100.0% 83.6%
4023099 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 80.0 5.86e-01 97.9% 40.0%
3194125 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 79.0 6.57e-01 97.9% 57.5%
4135389 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 66.0 5.74e-01 78.7% 52.9%
3845951 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 79.0 6.44e-01 97.9% 55.3%
3903644 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 65.0 5.92e-01 76.6% 60.0%
3613821 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 80.0 6.91e-01 97.9% 65.7%
3248494 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 79.0 7.05e-01 97.9% 72.3%
3415320 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 67.0 5.83e-01 80.9% 54.3%
3461596 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.89 78.0 6.75e-01 97.9% 64.3%
3355293 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 78.0 6.04e-01 97.9% 47.0%
3669426 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.89 71.0 7.44e-01 87.2% 95.3%
3698023 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 78.0 5.77e-01 97.9% 40.9%
4073598 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 79.0 7.01e-01 97.9% 73.8%
3446581 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 78.0 6.33e-01 97.9% 55.3%
3245054 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 78.0 7.42e-01 97.9% 85.5%
3331906 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 67.0 6.63e-01 80.9% 76.0%
4022899 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 79.0 6.12e-01 100.0% 48.0%
3208443 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 77.0 5.80e-01 97.9% 42.9%
3902311 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 79.0 6.41e-01 100.0% 55.3%
3726578 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 76.0 6.25e-01 97.9% 56.5%
3485475 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 76.0 6.19e-01 95.7% 54.1%
3301272 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 77.0 5.77e-01 97.9% 42.7%
3833527 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 74.0 6.82e-01 93.6% 73.3%
3837673 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 65.0 6.66e-01 85.1% 82.2%
3259844 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.88 71.0 7.04e-01 89.4% 84.0%
4011985 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.88 76.0 6.07e-01 97.9% 50.0%
3490408 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 76.0 5.60e-01 97.9% 61.7%
3257387 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 76.0 6.24e-01 97.9% 54.1%
3458366 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 72.0 7.36e-01 91.5% 95.6%
3854754 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 66.0 7.03e-01 87.2% 95.0%
3783078 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 78.0 5.27e-01 100.0% 84.2%
3451260 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 77.0 7.11e-01 100.0% 80.0%
3726840 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 77.0 6.52e-01 97.9% 61.3%
3311102 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 67.0 7.14e-01 87.2% 97.5%
3531870 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 64.0 6.29e-01 78.7% 76.0%
3184741 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 78.0 5.86e-01 100.0% 44.5%
3810074 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.87 77.0 6.44e-01 100.0% 59.5%
4021336 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.87 78.0 7.16e-01 100.0% 81.7%
3810743 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.87 77.0 4.80e-01 100.0% 20.0%
3792735 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.87 73.0 4.23e-01 100.0% 11.6%
3300009 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 76.0 6.26e-01 95.7% 57.5%
3812115 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 76.0 6.57e-01 100.0% 64.4%
3691218 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 75.0 7.10e-01 97.9% 81.8%
3344585 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 78.0 6.94e-01 100.0% 76.9%
3909942 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 72.0 5.50e-01 95.7% 40.9%
3806475 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 76.0 6.49e-01 100.0% 62.7%
3575456 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 73.0 5.87e-01 100.0% 50.0%
3309661 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 69.0 5.72e-01 93.6% 51.2%
3826054 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 75.0 7.18e-01 100.0% 85.5%
3428949 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 72.0 6.88e-01 100.0% 80.0%
3617852 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 75.0 6.52e-01 97.9% 68.6%
3536855 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 77.0 6.04e-01 100.0% 51.6%
4545458 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 73.0 5.71e-01 97.9% 48.0%
3527636 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.85 74.0 6.02e-01 100.0% 86.5%
3675534 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 71.0 5.94e-01 95.7% 55.0%
3355899 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 74.0 6.05e-01 97.9% 55.3%
3466887 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 74.0 7.27e-01 100.0% 94.0%
3335288 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 70.0 5.28e-01 95.7% 40.0%
3653326 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 69.0 7.06e-01 93.6% 95.6%
3425357 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.84 73.0 6.10e-01 95.7% 59.0%
3300713 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 69.0 5.90e-01 95.7% 57.3%
3617289 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 73.0 6.80e-01 100.0% 78.3%
3186415 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 74.0 6.07e-01 100.0% 56.5%
3856479 207.1.1.85 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.83 74.0 4.18e-01 95.7% 17.3%
3320433 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 74.0 6.81e-01 100.0% 78.3%
3515309 207.1.1.79 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.83 74.0 4.30e-01 100.0% 26.4%
3380116 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 73.0 6.46e-01 100.0% 69.1%
3664817 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 74.0 6.09e-01 100.0% 57.5%
3311874 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.82 67.0 5.81e-01 97.9% 58.7%
3552610 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 70.0 5.97e-01 95.7% 62.2%
3817535 207.1.1.85 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.81 73.0 4.28e-01 100.0% 38.6%
3350782 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 73.0 4.34e-01 100.0% 27.1%
3644174 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 69.0 5.91e-01 95.7% 61.3%
3680688 207.1.1.85 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.79 70.0 3.98e-01 95.7% 14.8%
3303758 207.1.1.85 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.79 69.0 3.72e-01 95.7% 11.1%
3769778 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.77 65.0 4.05e-01 95.7% 35.5%
D2 medium residues 150-201_300-369
PDB
D3 medium residues 202-299
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nnvA01 3.10.450.140 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative 0.61 43.0 4.33e-01 99.0% 72.0%
1ywmA01 2.60.500.10 Mainly Beta › Sandwich › Surface Active Protein fold › Surface Active Protein domain 0.57 39.0 3.99e-01 73.5% 70.4%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 39.0 3.45e-01 91.8% 49.4%
2p9rA00 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.52 33.0 3.34e-01 85.7% 62.7%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4036788 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.57 44.0 3.58e-01 81.6% 66.7%
3243615 708.1.1.18 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DUF7747 0.55 39.0 3.27e-01 75.5% 51.7%
4017019 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.55 43.0 3.40e-01 81.6% 63.2%
4167075 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.52 41.0 3.51e-01 81.6% 84.0%
3484299 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 45.0 2.93e-01 100.0% 58.0%
3705250 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.50 37.0 3.04e-01 81.6% 42.2%
D4 medium residues 370-390_420-514_594-605
PDB
D5 medium residues 515-555_606-661
PDB