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F-box_domain_protein
Euk-VirPandoravirus_inopinatum
F-box_domain_protein__YP_009120021__Pandoravirus_inopinatum__1605721
Identity
- Accession:
- YP_009120021 ↗
- Protein ID:
- F-box_domain_protein
- Kingdom:
- euk
Quality
70.9
mean pLDDT
Cluster
View cluster (47 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 14-160
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12937.13 best | F-box-like | 25.1 | 1.70e-05 | 36.7% | 76.6% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d7iB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.58 | 35.0 | 4.13e-01 | 99.3% | 87.8% |
D2
medium
residues 251-347
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4qfvC02 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.75 | 45.0 | 5.31e-01 | 71.1% | 89.2% |
| 3eu9C00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.74 | 69.0 | 5.13e-01 | 100.0% | 44.2% |
| 3uxgA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.74 | 68.0 | 5.67e-01 | 100.0% | 61.3% |
| 7xceA01 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.73 | 68.0 | 4.96e-01 | 100.0% | 39.8% |
| 3b7bB00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.73 | 67.0 | 5.04e-01 | 100.0% | 44.2% |
| 2rfmB00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.72 | 66.0 | 5.30e-01 | 100.0% | 53.3% |
| 3keaA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.72 | 66.0 | 4.65e-01 | 100.0% | 35.7% |
| 4hi8A00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.71 | 65.0 | 5.33e-01 | 100.0% | 58.2% |
| 4uucA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.70 | 64.0 | 4.85e-01 | 100.0% | 44.3% |
| 1qymA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.70 | 64.0 | 4.83e-01 | 100.0% | 44.4% |
| 4bszB00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.70 | 63.0 | 5.41e-01 | 99.0% | 72.7% |
| 5aarA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.68 | 61.0 | 4.93e-01 | 100.0% | 62.2% |
| 4jgiA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.56 | 39.0 | 4.26e-01 | 73.2% | 97.5% |
| 3otnA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 46.0 | 3.05e-01 | 97.9% | 73.9% |
| 3gzsA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 45.0 | 2.95e-01 | 97.9% | 67.7% |
| 1gzjA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 46.0 | 3.32e-01 | 99.0% | 43.4% |
| 3a2pA00 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.53 | 43.0 | 2.84e-01 | 92.8% | 80.3% |
| 2xqyA02 | 1.20.58.1340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 42.0 | 3.85e-01 | 93.8% | 98.6% |
| 3igzB01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.51 | 41.0 | 2.94e-01 | 88.7% | 45.9% |
| 4axsA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.50 | 43.0 | 3.15e-01 | 99.0% | 55.7% |
ECOD (65)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3171227 | 109.3.1.20 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_4 | 0.79 | 69.0 | 5.18e-01 | 100.0% | 41.4% |
| 3267273 | 109.3.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 | 0.78 | 63.0 | 5.95e-01 | 100.0% | 72.2% |
| 3727420 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.77 | 72.0 | 5.09e-01 | 100.0% | 46.7% |
| 3272965 | 109.3.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 | 0.76 | 57.0 | 5.61e-01 | 97.9% | 73.3% |
| 3722207 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.73 | 68.0 | 4.76e-01 | 100.0% | 39.3% |
| 3198211 | 109.3.1.347 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_KRIT1 | 0.73 | 67.0 | 4.44e-01 | 100.0% | 30.0% |
| 3875403 | 109.3.1.163 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 | 0.72 | 66.0 | 5.01e-01 | 100.0% | 45.1% |
| 4559319 | 109.3.1.100 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+TRP_2+Ank_2 | 0.71 | 66.0 | 5.03e-01 | 100.0% | 50.0% |
| 3437396 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.71 | 63.0 | 4.97e-01 | 100.0% | 48.9% |
| 3197410 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.70 | 63.0 | 4.12e-01 | 100.0% | 25.0% |
| 3671666 | 109.3.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank | 0.69 | 63.0 | 4.42e-01 | 100.0% | 60.7% |
| 3259553 | 109.3.1.20 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_4 | 0.69 | 63.0 | 4.36e-01 | 100.0% | 46.1% |
| 4017060 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.68 | 61.0 | 4.06e-01 | 100.0% | 27.2% |
| 3267790 | 109.3.1.171 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF29011 | 0.65 | 58.0 | 4.78e-01 | 96.9% | 61.2% |
| 3273246 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 55.0 | 4.42e-01 | 100.0% | 61.1% |
| 3830360 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.58 | 49.0 | 3.01e-01 | 96.9% | 14.6% |
| 3463299 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.58 | 48.0 | 4.40e-01 | 100.0% | 68.5% |
| 3468311 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.57 | 44.0 | 3.01e-01 | 95.9% | 22.0% |
| 3648612 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.56 | 48.0 | 3.28e-01 | 95.9% | 25.2% |
| 3357025 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.56 | 50.0 | 3.47e-01 | 100.0% | 33.0% |
| 3383477 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.56 | 49.0 | 4.20e-01 | 96.9% | 61.3% |
| 3447760 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.56 | 48.0 | 3.51e-01 | 95.9% | 34.1% |
| 3352830 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.56 | 45.0 | 4.11e-01 | 94.8% | 63.7% |
| 3678516 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.56 | 42.0 | 3.96e-01 | 96.9% | 64.0% |
| 3826131 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.56 | 48.0 | 3.22e-01 | 100.0% | 23.8% |
| 3679171 | 109.4.1.1293 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1 | 0.56 | 43.0 | 4.41e-01 | 96.9% | 86.3% |
| 3304690 | 109.4.1.1335 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif | 0.56 | 47.0 | 3.23e-01 | 96.9% | 25.3% |
| 3653364 | 109.4.1.1293 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1 | 0.56 | 44.0 | 3.56e-01 | 92.8% | 43.7% |
| 3803781 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.56 | 46.0 | 3.66e-01 | 96.9% | 42.9% |
| 3825886 | 109.4.1.1256 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 | 0.56 | 46.0 | 3.13e-01 | 95.9% | 23.8% |
| 3462320 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.56 | 47.0 | 3.65e-01 | 95.9% | 40.9% |
| 3434775 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.56 | 48.0 | 2.95e-01 | 96.9% | 14.6% |
| 3824590 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.56 | 44.0 | 3.75e-01 | 96.9% | 50.9% |
| 3436796 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.55 | 47.0 | 2.91e-01 | 100.0% | 15.2% |
| 3460241 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.55 | 47.0 | 4.23e-01 | 96.9% | 66.4% |
| 3374152 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.55 | 42.0 | 3.92e-01 | 95.9% | 64.0% |
| 3437190 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.55 | 44.0 | 3.85e-01 | 95.9% | 56.7% |
| 3823364 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.55 | 46.0 | 4.09e-01 | 96.9% | 62.8% |
| 3825925 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.55 | 47.0 | 4.12e-01 | 100.0% | 61.3% |
| 3297832 | 109.4.1.1335 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif | 0.55 | 44.0 | 2.68e-01 | 96.9% | 11.6% |
| 3650243 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.55 | 45.0 | 4.27e-01 | 100.0% | 76.5% |
| 3824465 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.55 | 45.0 | 4.03e-01 | 96.9% | 62.1% |
| 3676670 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.55 | 49.0 | 3.25e-01 | 100.0% | 87.4% |
| 3305974 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.54 | 44.0 | 3.85e-01 | 100.0% | 56.8% |
| 3644205 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.54 | 46.0 | 3.93e-01 | 95.9% | 56.4% |
| 3356411 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.54 | 45.0 | 3.71e-01 | 95.9% | 48.6% |
| 3656329 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.54 | 44.0 | 3.60e-01 | 100.0% | 46.3% |
| 3670028 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.54 | 43.0 | 3.89e-01 | 92.8% | 61.4% |
| 3813221 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.54 | 45.0 | 4.03e-01 | 100.0% | 64.3% |
| 3456865 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.54 | 42.0 | 3.98e-01 | 94.8% | 69.2% |
| 3315528 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.54 | 45.0 | 3.69e-01 | 95.9% | 48.4% |
| 3833574 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.54 | 46.0 | 3.98e-01 | 96.9% | 60.6% |
| 3299036 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.53 | 42.0 | 4.20e-01 | 99.0% | 84.0% |
| 3657969 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.53 | 44.0 | 3.71e-01 | 100.0% | 52.9% |
| 3328279 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.53 | 42.0 | 4.17e-01 | 99.0% | 85.0% |
| 3675669 | 109.4.1.1293 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1 | 0.52 | 45.0 | 3.71e-01 | 100.0% | 51.7% |
| 3372905 | 109.4.1.1261 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long | 0.52 | 45.0 | 3.63e-01 | 96.9% | 47.9% |
| 3321887 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.52 | 42.0 | 3.28e-01 | 96.9% | 37.1% |
| 3438125 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.52 | 44.0 | 3.69e-01 | 100.0% | 51.4% |
| 3424646 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.52 | 43.0 | 3.09e-01 | 100.0% | 28.7% |
| 3301232 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.51 | 42.0 | 3.89e-01 | 100.0% | 69.2% |
| 3299887 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.51 | 43.0 | 4.13e-01 | 100.0% | 79.2% |
| 3671483 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.51 | 43.0 | 3.59e-01 | 96.9% | 65.9% |
| 3337139 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.51 | 44.0 | 3.78e-01 | 100.0% | 59.4% |
| 3446134 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.50 | 43.0 | 3.48e-01 | 95.9% | 47.7% |
D3
medium
residues 514-656