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F-box_domain_protein
Euk-VirPandoravirus_inopinatum
F-box_domain_protein__YP_009120026__Pandoravirus_inopinatum__1605721
Identity
- Accession:
- YP_009120026 ↗
- Protein ID:
- F-box_domain_protein
- Kingdom:
- euk
Quality
51.2
mean pLDDT
Cluster
View cluster (39 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 33-128
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12937.13 best | F-box-like | 30.1 | 4.60e-07 | 39.6% | 68.1% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4it4A02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.59 | 35.0 | 3.64e-01 | 70.8% | 61.5% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.57 | 37.0 | 3.96e-01 | 71.9% | 75.9% |
| 3wiwA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.55 | 46.0 | 3.16e-01 | 93.8% | 34.8% |
| 1gaxA02 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.54 | 39.0 | 3.00e-01 | 76.0% | 37.4% |
| 2ouwB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.53 | 38.0 | 3.51e-01 | 77.1% | 75.7% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.53 | 37.0 | 3.54e-01 | 71.9% | 79.6% |
| 2v5cA03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.51 | 40.0 | 3.63e-01 | 82.3% | 80.0% |
| 7y4rB01 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.50 | 35.0 | 3.43e-01 | 77.1% | 66.0% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3189379 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.86 | 45.0 | 5.48e-01 | 82.3% | 76.9% |
| 4422459 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.84 | 43.0 | 5.04e-01 | 88.5% | 70.0% |
| 3324307 | 145.1.1.5 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 | 0.82 | 40.0 | 4.84e-01 | 88.5% | 70.8% |
| 3848693 | 145.1.1.37 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › Kelch_2, F-box-like, Kelch_3, Kelch_KLHDC2_KLHL20_DRC7 | 0.63 | 58.0 | 3.77e-01 | 100.0% | 63.8% |
| 3567626 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.62 | 57.0 | 3.72e-01 | 99.0% | 75.3% |
| 3439829 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.62 | 43.0 | 4.49e-01 | 71.9% | 83.3% |
| 4012180 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.61 | 44.0 | 3.86e-01 | 74.0% | 59.3% |
| 3678716 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.60 | 39.0 | 4.52e-01 | 86.5% | 91.4% |
| 3457731 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.59 | 45.0 | 4.89e-01 | 83.3% | 93.8% |
| 2886198 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.59 | 38.0 | 3.18e-01 | 80.2% | 38.0% |
| 3741281 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 46.0 | 3.23e-01 | 88.5% | 47.1% |
| 3403835 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.57 | 45.0 | 4.82e-01 | 90.6% | 94.1% |
| 3390129 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 48.0 | 3.65e-01 | 100.0% | 65.4% |
| 3259075 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.54 | 40.0 | 4.39e-01 | 86.5% | 93.6% |
| 3443498 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.53 | 43.0 | 4.59e-01 | 90.6% | 97.6% |
| 3441758 | 207.1.1.85 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like | 0.53 | 48.0 | 3.21e-01 | 100.0% | 52.3% |
| 3635190 | 109.3.1.170 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_4 | 0.52 | 43.0 | 3.07e-01 | 87.5% | 38.1% |
| 3437951 | 207.1.1.79 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box | 0.51 | 47.0 | 2.96e-01 | 100.0% | 46.9% |
| 3639389 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 46.0 | 2.95e-01 | 100.0% | 48.9% |
| 3441517 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.50 | 47.0 | 2.91e-01 | 100.0% | 40.6% |
| 3707987 | 109.4.1.917 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TT21_N | 0.50 | 40.0 | 2.89e-01 | 85.4% | 32.4% |
D2
medium
residues 129-209_228-287