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F-box_domain_protein

Euk-Vir

Pandoravirus_inopinatum

F-box_domain_protein__YP_009120711__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009120711 ↗
Protein ID:
F-box_domain_protein
Kingdom:
euk

Quality

73.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_inopinatum

TaxID: 1605721

Cluster

View cluster (47 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 185-285_300-335
PDB
Domain cluster: rep: F-box_incomplete_domain_containing_protein__YP_009482797__Pandoravirus_quercus__2107709__D201-285_304-336
D2 medium residues 336-421
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zgdA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.72 59.0 5.64e-01 93.0% 77.3%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.70 48.0 4.69e-01 70.9% 87.2%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.68 53.0 5.08e-01 83.7% 77.0%
3ljnA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.68 61.0 4.17e-01 100.0% 29.6%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.68 57.0 5.47e-01 97.7% 79.2%
3rjvA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 46.0 3.84e-01 91.9% 42.4%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.66 52.0 4.77e-01 84.9% 96.5%
3pubA01 1.10.10.2400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain 0.64 49.0 5.18e-01 87.2% 93.2%
7xcnM01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.64 51.0 5.33e-01 86.0% 100.0%
5z2mB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.64 58.0 4.92e-01 100.0% 64.2%
4dkcB00 1.20.1250.80 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 0.63 43.0 3.53e-01 70.9% 70.0%
2j9qB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 49.0 3.48e-01 84.9% 85.5%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.62 53.0 4.83e-01 97.7% 70.2%
2qeuB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.62 53.0 4.67e-01 98.8% 78.2%
3bgeA01 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.62 50.0 4.87e-01 87.2% 85.4%
2e2eA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 46.0 3.82e-01 95.3% 46.4%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.59 52.0 4.78e-01 98.8% 86.6%
3dzaA01 1.20.120.1940 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YfdX protein domain 0.59 41.0 3.71e-01 70.9% 76.9%
3fp3A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 46.0 3.97e-01 100.0% 53.3%
4uqxA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 44.0 4.41e-01 100.0% 80.9%
1wy6A00 1.25.40.350 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 47.0 3.88e-01 100.0% 49.7%
3l9tA02 1.25.40.290 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains 0.56 49.0 4.46e-01 100.0% 72.9%
2qw6D00 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.56 44.0 4.42e-01 83.7% 87.2%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.56 41.0 4.09e-01 80.2% 97.8%
4ga0A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 44.0 3.79e-01 100.0% 53.1%
1wzaA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 47.0 3.23e-01 100.0% 38.2%
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.52 27.0 3.03e-01 96.5% 61.5%
2qyuA04 1.10.4140.10 Mainly Alpha › Orthogonal Bundle › effector protein (NleL) fold › effector protein (NleL) 0.52 39.0 3.15e-01 83.7% 65.8%
2b1eA01 1.20.58.1150 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 38.0 3.82e-01 79.1% 89.5%
1ynbA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 35.0 2.90e-01 72.1% 86.8%
3beeA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 41.0 4.06e-01 100.0% 84.6%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.50 37.0 3.35e-01 79.1% 58.8%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3257617 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.72 67.0 4.16e-01 100.0% 20.5%
3456203 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.71 57.0 4.65e-01 100.0% 47.7%
3682097 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.71 65.0 5.35e-01 98.8% 59.3%
3834553 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.70 65.0 4.76e-01 100.0% 40.5%
3309199 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.70 64.0 5.03e-01 100.0% 62.3%
3463898 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.70 64.0 4.51e-01 100.0% 37.3%
3832299 109.4.1.1959 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, TPR_At1g68980 0.69 64.0 3.77e-01 100.0% 15.5%
3651529 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.69 64.0 5.15e-01 100.0% 61.4%
3817872 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.69 63.0 4.61e-01 100.0% 42.7%
3824432 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.69 57.0 3.48e-01 100.0% 14.4%
3383002 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.69 60.0 4.51e-01 100.0% 40.5%
3321683 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.69 56.0 3.77e-01 100.0% 23.7%
3645652 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 62.0 4.75e-01 98.8% 50.5%
3336480 109.4.1.1273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.68 51.0 3.40e-01 100.0% 21.9%
3328963 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.67 55.0 4.35e-01 100.0% 42.8%
3364057 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.66 52.0 3.75e-01 100.0% 29.0%
3325696 109.4.1.1279 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long, TPR_24 0.66 55.0 3.24e-01 100.0% 11.6%
3692738 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 56.0 5.38e-01 94.2% 91.0%
3348296 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 54.0 5.07e-01 100.0% 73.3%
3462933 109.4.1.1280 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long 0.66 53.0 3.64e-01 100.0% 24.4%
3285335 109.4.1.462 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_4 0.65 47.0 4.46e-01 96.5% 64.0%
3708535 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 52.0 3.84e-01 100.0% 32.9%
3441099 109.4.1.1293 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1 0.65 54.0 4.74e-01 100.0% 62.4%
3372578 109.4.1.1305 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long, TPR_24 0.65 57.0 3.64e-01 100.0% 19.1%
3976808 109.4.1.109 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.65 46.0 3.66e-01 95.3% 37.9%
3316394 109.4.1.1292 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3 0.64 54.0 4.31e-01 100.0% 46.5%
4944933 608.1.1.0 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like 0.64 58.0 5.31e-01 98.8% 89.1%
4981494 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.64 57.0 5.29e-01 98.8% 89.1%
3833628 109.4.1.1305 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long, TPR_24 0.64 52.0 3.30e-01 100.0% 17.3%
3812204 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.64 54.0 3.92e-01 100.0% 32.4%
3831040 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.64 55.0 4.29e-01 97.7% 43.7%
3367807 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.64 53.0 4.22e-01 100.0% 45.9%
3343476 109.4.1.1275 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long, TPR_24 0.64 52.0 3.20e-01 98.8% 14.2%
3676477 109.4.1.1274 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long 0.63 52.0 3.24e-01 100.0% 15.9%
3339600 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 54.0 5.11e-01 100.0% 80.0%
3832025 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.63 53.0 4.44e-01 100.0% 54.5%
3325953 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.63 51.0 4.25e-01 100.0% 48.8%
3724637 109.4.1.1329 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NatB_MDM20, PF31234 0.63 54.0 3.13e-01 100.0% 10.4%
3344064 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.62 54.0 3.64e-01 100.0% 25.6%
3818259 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.62 54.0 3.98e-01 100.0% 36.1%
3324469 109.4.1.1641 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3, PPR_long 0.62 52.0 3.86e-01 100.0% 34.8%
5027258 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.62 54.0 4.90e-01 98.8% 82.5%
4978717 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.62 54.0 5.11e-01 98.8% 93.3%
3592461 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 49.0 4.19e-01 100.0% 53.6%
3646898 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.61 50.0 4.61e-01 100.0% 68.7%
3822899 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.60 53.0 4.38e-01 100.0% 67.5%
3678234 109.4.1.1277 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 0.60 49.0 3.28e-01 95.3% 22.0%
3835622 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.60 53.0 3.81e-01 100.0% 33.1%
3328095 109.4.1.1273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.60 48.0 4.38e-01 100.0% 64.2%
4073654 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.60 49.0 3.89e-01 87.2% 63.6%
4029639 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 53.0 3.09e-01 100.0% 13.0%
3326751 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.58 51.0 3.13e-01 100.0% 21.1%
3667439 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.57 50.0 4.29e-01 100.0% 61.4%
3520011 109.4.1.835 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INT10 0.57 49.0 4.18e-01 100.0% 60.0%
3288806 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 47.0 3.97e-01 100.0% 63.4%
5025827 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 45.0 3.41e-01 100.0% 41.7%
3373563 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.50 41.0 2.98e-01 89.5% 92.7%
3294207 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.50 41.0 3.02e-01 89.5% 93.0%
D3 medium residues 422-500_543-572
PDB
D4 medium residues 501-542_573-611
PDB