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F-box_domain_protein

Euk-Vir

Pandoravirus_inopinatum

F-box_domain_protein__YP_009120772__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009120772 ↗
Protein ID:
F-box_domain_protein
Kingdom:
euk

Quality

74.0 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_inopinatum

TaxID: 1605721

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 267-331
PDB
Domain cluster: rep: F-box_incomplete_domain__YP_008436548__Pandoravirus_salinus__1349410__D270-332
D2 medium residues 15-88
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g10A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 50.0 4.11e-01 82.4% 75.0%
2radA03 1.20.1440.30 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain 0.62 48.0 4.05e-01 83.8% 81.1%
3fgrA02 1.10.439.20 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 0.61 38.0 3.17e-01 86.5% 35.9%
1otkA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 47.0 3.34e-01 85.1% 93.0%
4mudC00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 43.0 3.08e-01 75.7% 25.9%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 46.0 4.23e-01 83.8% 79.2%
3nivC02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 45.0 3.85e-01 83.8% 58.1%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 45.0 3.83e-01 83.8% 93.8%
2np5D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 46.0 3.66e-01 86.5% 43.7%
7zb5E01 3.40.50.10810 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain 0.56 49.0 3.30e-01 98.6% 84.1%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.56 47.0 4.26e-01 98.6% 88.1%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.56 46.0 3.66e-01 90.5% 98.0%
5u4nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 46.0 3.06e-01 100.0% 49.4%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.53 36.0 3.01e-01 70.3% 42.9%
3gcgB00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.53 38.0 2.99e-01 75.7% 76.3%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3347634 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.88 46.0 5.88e-01 100.0% 86.7%
3324307 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.81 47.0 5.01e-01 100.0% 66.2%
3826138 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.79 57.0 3.41e-01 74.3% 40.4%
3448206 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 47.0 5.35e-01 90.5% 80.0%
3441758 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.75 55.0 3.43e-01 77.0% 43.9%
4422459 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 50.0 5.14e-01 100.0% 72.9%
3319774 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 51.0 5.09e-01 100.0% 70.7%
3819371 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 50.0 5.65e-01 98.6% 96.4%
3390129 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 48.0 3.30e-01 100.0% 22.5%
4506757 3922.1.1.129 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › SMC_N 0.67 49.0 2.98e-01 77.0% 47.3%
4975245 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.65 45.0 4.25e-01 71.6% 94.3%
3205574 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.65 57.0 3.68e-01 95.9% 29.5%
3439829 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.65 54.0 5.04e-01 100.0% 73.3%
3443498 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.65 55.0 5.28e-01 94.6% 96.5%
3186659 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.64 49.0 4.23e-01 83.8% 86.7%
3678716 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.64 53.0 5.43e-01 97.3% 94.3%
3916304 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.63 54.0 5.05e-01 94.6% 82.2%
3403835 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.62 52.0 5.01e-01 91.9% 92.9%
4978032 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.62 51.0 3.88e-01 93.2% 46.5%
3319968 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.62 43.0 4.48e-01 83.8% 78.6%
3649574 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.61 45.0 3.99e-01 82.4% 53.2%
4253545 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.61 35.0 3.56e-01 93.2% 56.0%
3437714 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.61 54.0 4.52e-01 100.0% 76.2%
3204329 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.60 53.0 4.74e-01 97.3% 92.4%
5047701 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.59 51.0 3.81e-01 95.9% 88.1%
4012180 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.58 51.0 4.08e-01 94.6% 55.7%
3266606 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 49.0 3.45e-01 95.9% 47.6%
3457731 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.58 53.0 5.18e-01 100.0% 92.5%
3698257 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.57 49.0 4.80e-01 94.6% 93.8%
3959099 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.57 42.0 3.56e-01 83.8% 45.4%
3633421 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.57 48.0 2.86e-01 100.0% 13.1%
3725732 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.57 49.0 4.78e-01 94.6% 87.5%
3309226 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.56 52.0 4.43e-01 100.0% 93.9%
3939532 6155.1.1.7 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › CLPTM1 0.56 46.0 3.59e-01 89.2% 52.3%
None — 0.55 50.0 2.92e-01 98.6% 93.0%
3548480 109.54.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.54 44.0 3.59e-01 97.3% 47.1%
4323766 150.3.1.3 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL6 0.54 44.0 3.37e-01 89.2% 60.0%
3927278 109.4.1.1393 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26715 0.51 44.0 3.44e-01 100.0% 51.8%
D3 medium residues 89-241
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009480767__Pandoravirus_macleodensis__2107707__D109-271
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4uucA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.73 42.0 3.70e-01 100.0% 39.4%
5aarA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.71 41.0 3.87e-01 100.0% 47.0%
6skuA01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.57 38.0 3.79e-01 100.0% 63.5%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.56 36.0 3.97e-01 92.8% 81.0%
3ezxA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.53 30.0 3.82e-01 86.9% 98.8%
2qeuB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.52 35.0 3.80e-01 93.5% 79.7%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.50 22.0 3.30e-01 93.5% 98.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3543780 109.3.1.168 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_5 0.71 45.0 3.36e-01 100.0% 27.0%
3847537 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.71 42.0 4.36e-01 100.0% 62.9%
3744313 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 42.0 3.17e-01 100.0% 26.4%
3266654 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.64 42.0 2.98e-01 100.0% 23.0%
5004518 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.55 28.0 3.86e-01 83.7% 100.0%