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F-box_incomplete_domain

Euk-Vir

Pandoravirus_salinus

F-box_incomplete_domain__YP_008436429__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008436429 ↗
Protein ID:
F-box_incomplete_domain
Kingdom:
euk

Quality

77.4 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 194-262
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_977__YP_008438212__Pandoravirus_salinus__1349410__D191-249
D2 medium residues 263-387
PDB
Domain cluster: rep: hypothetical_protein_pmac_cds_414__YP_009481098__Pandoravirus_macleodensis__2107707__D276-395
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rlyA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.70 64.0 4.71e-01 97.6% 43.5%
1qymA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.70 64.0 5.18e-01 97.6% 56.5%
4uucA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.69 63.0 5.18e-01 100.0% 56.1%
2rfmB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.69 63.0 5.53e-01 100.0% 70.1%
1ympA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.68 63.0 6.22e-01 100.0% 94.7%
2dznA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.68 63.0 5.12e-01 100.0% 58.4%
4hi8A00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.68 63.0 5.62e-01 100.0% 76.5%
2f8xK00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.67 62.0 5.12e-01 100.0% 59.6%
3uxgA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.66 61.0 5.53e-01 100.0% 79.8%
1n4kA02 1.25.10.30 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain 0.64 45.0 4.30e-01 72.8% 90.5%
3pubA01 1.10.10.2400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain 0.62 37.0 4.58e-01 76.8% 100.0%
3mkqA03 1.25.40.470 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 43.0 3.68e-01 99.2% 44.3%
4gyoA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 51.0 4.27e-01 93.6% 75.0%
1wy6A00 1.25.40.350 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 52.0 4.84e-01 100.0% 78.6%
3cvpA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 51.0 3.95e-01 97.6% 62.4%
7ldgA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 51.0 4.29e-01 100.0% 86.4%
6fdpA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 46.0 4.72e-01 100.0% 91.7%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 47.0 4.21e-01 92.8% 84.9%
4me2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 49.0 4.26e-01 100.0% 74.2%
2xevB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 47.0 4.76e-01 100.0% 96.0%
6hftA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 46.0 4.59e-01 100.0% 90.6%
2lniA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 45.0 4.50e-01 99.2% 85.7%
1a17A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 45.0 4.17e-01 99.2% 70.4%
2katA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 42.0 4.36e-01 94.4% 91.3%
3urzA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 42.0 3.64e-01 91.2% 52.0%
2ff4A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 46.0 4.10e-01 95.2% 78.0%
4yvoA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 40.0 4.10e-01 78.4% 91.6%
6u3wB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 46.0 3.61e-01 100.0% 41.9%
1w3bB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 45.0 3.26e-01 92.0% 45.7%
4ap2B01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.53 38.0 3.74e-01 73.6% 94.0%
1zu2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 45.0 4.22e-01 94.4% 91.8%
3gz1A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 43.0 4.19e-01 99.2% 77.8%
5tqbB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 46.0 3.45e-01 97.6% 59.0%
2c2lA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 44.0 4.38e-01 96.0% 88.0%
3vtxB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 46.0 4.09e-01 100.0% 66.7%
4wnfA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 46.0 3.73e-01 100.0% 61.2%
3ly7A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 46.0 4.29e-01 100.0% 81.4%
3fflA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 45.0 4.52e-01 99.2% 96.8%
1ihgA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 46.0 4.38e-01 100.0% 86.9%
2vsyA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 43.0 4.18e-01 100.0% 84.5%
3gw4A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 44.0 3.91e-01 100.0% 73.4%
5aioA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 40.0 3.81e-01 100.0% 70.3%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3437396 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.77 68.0 5.85e-01 100.0% 62.1%
None — 0.77 63.0 4.72e-01 96.8% 36.9%
3733564 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.75 63.0 6.66e-01 95.2% 100.0%
3275803 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.75 65.0 4.45e-01 100.0% 28.3%
3669348 109.3.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.74 64.0 5.81e-01 100.0% 69.7%
4306725 109.3.1.20 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_4 0.73 64.0 4.92e-01 95.2% 44.6%
4018917 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.72 67.0 5.95e-01 98.4% 74.7%
3255371 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.71 65.0 5.63e-01 99.2% 70.7%
4001612 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.71 64.0 5.86e-01 98.4% 75.6%
4012524 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.71 66.0 4.66e-01 100.0% 66.0%
3791268 109.3.1.166 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.70 65.0 4.61e-01 100.0% 34.9%
3296087 109.3.1.205 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF28612 0.70 65.0 5.29e-01 100.0% 56.4%
4325700 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.70 64.0 5.88e-01 100.0% 76.9%
3370231 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.70 62.0 6.29e-01 100.0% 97.6%
3195802 109.3.1.186 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_5 0.70 62.0 4.88e-01 100.0% 46.5%
3616524 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.69 64.0 5.48e-01 100.0% 68.7%
3358122 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.69 64.0 6.20e-01 100.0% 97.9%
4042478 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.69 58.0 3.77e-01 95.2% 21.3%
3277019 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.69 63.0 4.86e-01 100.0% 47.5%
3203926 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.69 64.0 4.70e-01 100.0% 40.3%
3683629 109.3.1.188 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF28568 0.69 61.0 4.38e-01 100.0% 40.0%
3724275 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.69 64.0 4.14e-01 100.0% 33.5%
3749303 109.3.1.7 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.68 63.0 4.67e-01 100.0% 48.4%
3883652 109.3.1.100 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+TRP_2+Ank_2 0.68 63.0 4.91e-01 100.0% 57.3%
3260807 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.68 61.0 4.74e-01 96.0% 50.4%
3879368 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.68 62.0 5.35e-01 100.0% 76.4%
3619592 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.68 62.0 4.76e-01 100.0% 49.8%
3252035 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.68 60.0 5.52e-01 96.0% 77.5%
3727990 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.65 60.0 4.80e-01 100.0% 61.1%
3722746 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.65 59.0 5.61e-01 100.0% 86.0%
3519832 109.3.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.65 59.0 3.99e-01 100.0% 35.1%
3826959 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.65 58.0 4.90e-01 100.0% 85.6%
3701880 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 52.0 4.62e-01 90.4% 86.5%
3817813 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.62 56.0 4.47e-01 100.0% 56.0%
3321887 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.62 50.0 4.09e-01 100.0% 45.8%
3311548 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.61 51.0 5.01e-01 100.0% 83.7%
3342889 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.61 53.0 4.86e-01 97.6% 87.1%
4825023 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.60 53.0 4.58e-01 98.4% 80.1%
3377308 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.60 54.0 3.52e-01 100.0% 28.2%
4584852 109.4.1.923 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › AEP1 0.60 53.0 4.77e-01 100.0% 77.8%
3369405 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.59 52.0 4.44e-01 100.0% 59.0%
3610785 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 53.0 3.65e-01 100.0% 71.6%
3665948 109.4.1.1273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.59 51.0 4.96e-01 100.0% 86.2%
3275448 109.3.1.171 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF29011 0.58 52.0 4.42e-01 100.0% 61.0%
3362664 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.58 50.0 4.13e-01 100.0% 51.1%
3651415 109.4.1.1282 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 0.58 52.0 4.43e-01 100.0% 78.5%
3446135 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.58 51.0 4.41e-01 100.0% 71.7%
3986923 109.4.1.216 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SLT_L 0.57 47.0 3.21e-01 100.0% 23.3%
3657968 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.57 51.0 3.85e-01 100.0% 46.7%
3479813 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 40.0 3.00e-01 75.2% 45.8%
3193888 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 48.0 4.24e-01 92.0% 78.9%
4803706 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.55 42.0 3.87e-01 80.8% 83.2%
3514869 109.4.1.449 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2,TPR_8 0.55 45.0 3.38e-01 97.6% 35.3%
3452165 109.4.1.2305 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_12, TPR_16 0.54 45.0 3.92e-01 100.0% 57.9%
3385284 109.4.1.202 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.54 45.0 2.91e-01 95.2% 54.4%
3319093 109.4.1.1441 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_11, TPR_16 0.54 46.0 3.42e-01 100.0% 35.8%
3592979 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 46.0 3.71e-01 100.0% 47.6%
4015550 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 43.0 3.60e-01 96.8% 83.3%