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F-box_incomplete_domain

Euk-Vir

Pandoravirus_salinus

F-box_incomplete_domain__YP_008436564__Pandoravirus_salinus__1349410

Identity

Accession:: YP_008436564 ↗
Protein ID:: F-box_incomplete_domain
Kingdom:: euk

Quality

65.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 122-180

PDB

Domain cluster: rep: F-box_incomplete_domain_containing_protein__YP_008318724__Pandoravirus_dulcis__1349409__D16-76

D2 medium residues 181-250

PDB

Domain cluster: rep: F-box_domain_containing_protein__YP_009482772__Pandoravirus_quercus__2107709__D189-248

D3 medium residues 283-390

PDB

Domain cluster: rep: F-box_domain_protein__YP_009120760__Pandoravirus_inopinatum__1605721__D278-381_436-447

D4 medium residues 607-785

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2o36A01	1.20.1050.40	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Endopeptidase. Chain P; domain 1	0.58	41.0	4.67e-01	82.1%	100.0%
3q18A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.55	35.0	4.20e-01	76.0%	97.4%
3wozB00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.55	45.0	4.14e-01	99.4%	66.4%
8d0vA01	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.52	43.0	3.33e-01	100.0%	39.6%
4c9bB00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.52	43.0	3.67e-01	88.8%	55.6%
5dlqB01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.52	47.0	3.53e-01	98.9%	57.0%
4crwA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.51	44.0	4.10e-01	92.7%	76.5%
5xn6D00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.51	36.0	3.17e-01	85.5%	48.5%
2b1eA02	1.20.1310.30	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like ›	0.51	40.0	4.32e-01	88.3%	100.0%
1dbhA01	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.51	38.0	3.67e-01	79.3%	72.5%
1i5nB00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.50	31.0	3.69e-01	83.2%	87.9%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4332068	109.4.1.758 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med26	0.62	42.0	4.34e-01	90.5%	73.3%
3715090	109.24.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9	0.61	38.0	4.53e-01	76.5%	94.8%
None	—		0.60	36.0	3.46e-01	74.9%	50.0%
3898996	109.4.1.219 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TINF2_N	0.57	32.0	3.17e-01	86.6%	47.5%
3405912	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.57	41.0	4.14e-01	74.3%	96.8%
3289384	1174.1.1.2 ↗	alpha complex topology › Potassium channel TMEM175 › Potassium channel TMEM175 › Potassium channel TMEM175 › LtrA	0.56	33.0	3.40e-01	71.5%	60.0%
3689497	109.4.1.1406 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, Vac14_Fab1_bd	0.54	43.0	4.16e-01	97.2%	73.5%
3253123	3978.1.1.1 ↗	alpha complex topology › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › FA_desaturase	0.54	39.0	3.24e-01	72.6%	76.4%
3427594	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	44.0	4.61e-01	99.4%	94.5%
3401287	603.2.1.12 ↗	alpha bundles › STAT-like › STAT › STAT › 7tm_7	0.52	44.0	3.30e-01	88.8%	87.5%
3498963	196.1.1.0 ↗	alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS	0.52	29.0	3.24e-01	72.1%	67.4%
3579685	631.1.1.1 ↗	alpha arrays › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › GLTP	0.52	41.0	3.93e-01	82.1%	100.0%
3190030	109.4.1.681 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2	0.52	41.0	3.87e-01	83.2%	93.2%
3403813	603.2.1.12 ↗	alpha bundles › STAT-like › STAT › STAT › 7tm_7	0.51	44.0	3.50e-01	93.3%	93.5%
3781461	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	46.0	3.62e-01	98.9%	48.6%
4162545	5069.1.1.4 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct	0.50	42.0	3.96e-01	91.1%	75.5%
3881209	1188.1.1.1 ↗	alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip	0.50	39.0	3.40e-01	81.6%	73.5%