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F-box_incomplete_domain

Euk-Vir

Pandoravirus_salinus

F-box_incomplete_domain__YP_008437038__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008437038 ↗
Protein ID:
F-box_incomplete_domain
Kingdom:
euk

Quality

59.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 60-109
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 32.6 7.50e-08 72.0% 66.0%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.93 67.0 6.96e-01 78.0% 82.6%
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.90 62.0 6.92e-01 72.0% 94.7%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.79 71.0 4.43e-01 100.0% 35.5%
4gr2A00 1.10.1200.210 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX 0.74 60.0 4.64e-01 90.0% 44.5%
3ebbA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.70 59.0 3.72e-01 96.0% 82.6%
4mcoA00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.69 54.0 3.29e-01 86.0% 78.2%
1e8yA03 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.68 54.0 3.66e-01 88.0% 29.6%
1lk3A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.67 54.0 3.93e-01 90.0% 58.1%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.64 53.0 4.06e-01 92.0% 47.4%
2y1vA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 47.0 3.18e-01 82.0% 37.8%
7toiA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.61 48.0 3.20e-01 88.0% 28.8%
3pvuA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.60 43.0 3.75e-01 78.0% 77.5%
3egeA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 44.0 2.82e-01 78.0% 37.2%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 51.0 3.68e-01 100.0% 64.2%
2gxaE01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.57 45.0 4.05e-01 92.0% 89.0%
2zwiA01 3.40.50.11120 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sialyltransferase, N-terminal GT-B Rossman nucleotide-binding domain 0.56 46.0 3.10e-01 100.0% 85.3%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.94e-01 84.0% 79.3%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3171073 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 75.0 5.50e-01 88.0% 37.4%
3300168 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 60.0 5.43e-01 70.0% 52.3%
2860146 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.92 65.0 6.36e-01 78.0% 69.8%
3418207 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.92 62.0 7.13e-01 70.0% 100.0%
2420136 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 65.0 6.35e-01 78.0% 69.8%
3698443 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 61.0 6.19e-01 70.0% 70.0%
3447860 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.90 61.0 6.38e-01 70.0% 77.8%
3315130 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.90 62.0 6.82e-01 72.0% 90.0%
3819371 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 64.0 6.24e-01 84.0% 69.1%
3660681 207.1.1.246 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box_5 0.89 60.0 3.51e-01 70.0% 10.0%
3347634 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.89 66.0 6.93e-01 82.0% 86.7%
3438368 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.89 63.0 6.59e-01 78.0% 82.2%
3314603 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.89 60.0 6.29e-01 70.0% 77.8%
3693224 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 62.0 6.87e-01 78.0% 92.5%
3349925 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 59.0 6.22e-01 70.0% 77.8%
3324307 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.88 63.0 5.77e-01 80.0% 58.5%
3370474 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 63.0 5.72e-01 84.0% 58.5%
3434959 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.87 61.0 6.43e-01 78.0% 82.2%
3655771 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 62.0 4.85e-01 84.0% 38.0%
3316546 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 62.0 5.81e-01 84.0% 63.3%
3683657 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 61.0 5.08e-01 84.0% 44.7%
3423604 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 62.0 6.28e-01 78.0% 80.0%
3665986 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 57.0 5.99e-01 70.0% 77.8%
3720343 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 58.0 4.83e-01 74.0% 42.4%
3189958 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 62.0 6.52e-01 80.0% 86.7%
3643363 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 56.0 6.13e-01 70.0% 87.5%
4284024 207.1.1.224 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF29466, PF29477 0.84 76.0 4.64e-01 100.0% 31.7%
3299681 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 62.0 6.29e-01 84.0% 80.0%
3848693 145.1.1.37 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › Kelch_2, F-box-like, Kelch_3, Kelch_KLHDC2_KLHL20_DRC7 0.83 73.0 4.23e-01 96.0% 89.4%
3806207 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 60.0 6.54e-01 78.0% 95.0%
3837757 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 58.0 5.05e-01 78.0% 49.3%
3643098 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 59.0 5.76e-01 80.0% 69.1%
3422989 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.82 75.0 4.24e-01 100.0% 22.6%
3727179 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 62.0 6.50e-01 98.0% 91.1%
3467883 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 56.0 5.30e-01 72.0% 61.7%
3567626 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 73.0 4.26e-01 98.0% 91.7%
3404584 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 61.0 6.34e-01 82.0% 88.9%
3658277 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 63.0 5.97e-01 84.0% 71.7%
3399647 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 65.0 6.37e-01 96.0% 80.0%
3924438 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 63.0 6.16e-01 86.0% 76.4%
3829036 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 69.0 5.57e-01 94.0% 96.8%
3643788 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 63.0 6.10e-01 84.0% 76.4%
None — 0.80 72.0 4.01e-01 100.0% 20.2%
3434120 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 53.0 5.82e-01 70.0% 89.7%
None — 0.79 69.0 4.27e-01 100.0% 32.1%
3916304 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 71.0 5.80e-01 100.0% 62.2%
3390129 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.78 71.0 4.49e-01 100.0% 42.1%
3430952 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.78 70.0 4.01e-01 100.0% 23.7%
3727492 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 58.0 6.05e-01 98.0% 88.9%
3457731 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 71.0 6.00e-01 100.0% 76.2%
4422459 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 69.0 6.09e-01 98.0% 68.6%
3448206 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 59.0 5.73e-01 86.0% 74.5%
3202188 207.1.1.309 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_15 0.78 68.0 3.93e-01 100.0% 28.8%
3632792 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 62.0 6.22e-01 86.0% 88.0%
3826138 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.78 70.0 4.02e-01 100.0% 25.2%
3441758 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.78 70.0 4.12e-01 100.0% 27.1%
3433159 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 54.0 5.75e-01 76.0% 92.5%
3642941 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.77 67.0 4.05e-01 100.0% 28.2%
3439829 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 69.0 5.62e-01 100.0% 61.1%
3319774 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 66.0 5.76e-01 96.0% 93.3%
3469135 207.1.1.134 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 0.77 67.0 3.97e-01 100.0% 32.6%
3639389 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.76 66.0 3.84e-01 100.0% 30.4%
3461664 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 55.0 5.71e-01 80.0% 86.7%
3309226 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 66.0 5.09e-01 100.0% 82.6%
3730335 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 58.0 5.85e-01 84.0% 86.0%
3205574 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 66.0 4.00e-01 100.0% 18.8%
3204329 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 65.0 5.09e-01 98.0% 81.9%
3437951 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.74 66.0 3.77e-01 100.0% 23.2%
3312286 207.1.1.134 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 0.74 66.0 3.85e-01 100.0% 23.8%
3184851 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 63.0 5.30e-01 98.0% 82.4%
3436360 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 62.0 5.02e-01 98.0% 55.0%
3834035 145.1.1.26 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › LRR_6, DUF7885 0.73 64.0 3.76e-01 100.0% 23.5%
3833961 207.1.1.183 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_2, FBD, LRR_At5g56370 0.73 64.0 3.74e-01 100.0% 22.1%
3810013 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 64.0 5.91e-01 100.0% 76.6%
4012180 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.73 63.0 4.56e-01 98.0% 47.1%
3642376 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.72 49.0 3.30e-01 72.0% 29.2%
3816494 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.72 63.0 3.67e-01 100.0% 20.3%
3650817 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.72 65.0 3.81e-01 100.0% 36.7%
3834480 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.72 63.0 3.76e-01 100.0% 29.1%
3180622 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.71 53.0 5.30e-01 82.0% 84.0%
3725732 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 62.0 5.28e-01 98.0% 78.8%
None — 0.68 55.0 3.68e-01 100.0% 37.8%
3640174 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.68 59.0 5.13e-01 98.0% 65.3%
None — 0.64 52.0 3.39e-01 100.0% 34.1%
5044101 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.54 48.0 3.32e-01 100.0% 61.1%
D2 medium residues 110-216_237-271
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009480767__Pandoravirus_macleodensis__2107707__D109-271
D3 medium residues 217-236_272-319
PDB
D4 medium residues 352-380_413-465
PDB