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F-box_incomplete_domain

Euk-Vir

Pandoravirus_salinus

F-box_incomplete_domain__YP_008437317__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008437317 ↗
Protein ID:
F-box_incomplete_domain
Kingdom:
euk

Quality

39.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-55
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 30.8 2.80e-07 77.4% 63.8%
PF00646.39 F-box 27.6 2.70e-06 75.5% 72.1%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i6jB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.90 66.0 7.26e-01 81.1% 97.6%
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.85 58.0 6.58e-01 75.5% 100.0%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.85 72.0 6.08e-01 96.2% 57.5%
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.83 62.0 6.61e-01 86.8% 93.5%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.80 71.0 4.41e-01 100.0% 19.7%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.79 70.0 5.67e-01 100.0% 90.0%
3ogkB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.76 51.0 5.58e-01 79.2% 90.2%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.76 66.0 5.41e-01 100.0% 92.9%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.73 64.0 5.42e-01 100.0% 97.7%
8gpsA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.72 55.0 4.40e-01 83.0% 42.9%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.65 54.0 3.84e-01 94.3% 35.5%
2xrhA00 1.20.120.1430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HP0721 helical bundle 0.65 46.0 3.62e-01 73.6% 72.0%
1vpdA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.63 48.0 3.73e-01 88.7% 91.6%
2w31A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 45.0 3.36e-01 83.0% 53.3%
1ciiA03 1.10.490.30 Mainly Alpha › Orthogonal Bundle › Globin-like › Colicin 0.56 43.0 3.19e-01 90.6% 64.3%
2l9bA00 1.25.40.630 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 45.0 3.90e-01 98.1% 82.4%
6nhiA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 39.0 2.50e-01 88.7% 13.6%
1n81A00 1.10.3030.10 Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 0.52 42.0 3.02e-01 96.2% 43.5%
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.51 37.0 3.52e-01 86.8% 64.6%
1eyqA01 1.10.890.20 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › 0.50 35.0 3.57e-01 75.5% 90.6%
ECOD (99)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3547224 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 81.0 6.73e-01 94.3% 57.6%
3524044 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 70.0 7.55e-01 81.1% 93.3%
3259844 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.93 75.0 7.77e-01 88.7% 92.0%
3446581 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 80.0 6.73e-01 96.2% 58.8%
3405102 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.91 65.0 7.38e-01 79.2% 100.0%
3643181 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 79.0 6.92e-01 96.2% 66.7%
3617852 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 77.0 6.97e-01 94.3% 70.0%
3276040 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 78.0 7.07e-01 96.2% 71.4%
3233030 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.90 65.0 7.26e-01 84.9% 100.0%
3236496 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.89 67.0 4.16e-01 92.5% 16.2%
3320433 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.89 72.0 6.94e-01 90.6% 76.7%
3300009 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 77.0 6.64e-01 96.2% 62.5%
3491937 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 81.0 6.69e-01 100.0% 58.9%
3856479 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.88 73.0 4.18e-01 100.0% 11.0%
3246390 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.88 66.0 7.08e-01 86.8% 93.3%
3613821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 74.0 6.72e-01 96.2% 70.0%
3731257 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 63.0 7.02e-01 81.1% 100.0%
3219180 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 62.0 6.92e-01 84.9% 100.0%
3425357 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 74.0 6.46e-01 96.2% 64.1%
3675534 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 74.0 6.38e-01 92.5% 86.3%
3311874 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 74.0 6.51e-01 94.3% 65.3%
3231350 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 66.0 7.11e-01 100.0% 95.6%
3489752 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 70.0 4.02e-01 98.1% 10.1%
3728200 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 72.0 6.57e-01 94.3% 70.0%
3697864 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 71.0 5.60e-01 92.5% 45.7%
3751898 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.86 64.0 5.80e-01 84.9% 60.0%
3843694 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 62.0 4.14e-01 81.1% 22.3%
3652521 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 75.0 6.68e-01 98.1% 69.9%
3821430 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 77.0 6.69e-01 100.0% 92.5%
3901480 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 76.0 6.62e-01 100.0% 96.2%
3458205 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 64.0 6.86e-01 92.5% 95.6%
3664817 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 71.0 6.14e-01 100.0% 61.3%
3708786 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 75.0 6.07e-01 100.0% 53.0%
3515309 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.84 77.0 4.49e-01 100.0% 19.5%
3939710 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 74.0 6.83e-01 100.0% 76.9%
3358453 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 76.0 6.87e-01 100.0% 95.7%
3694013 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 69.0 5.59e-01 94.3% 49.0%
3301272 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 75.0 5.83e-01 100.0% 69.1%
3194125 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 75.0 6.48e-01 100.0% 98.8%
4023099 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 75.0 5.74e-01 100.0% 87.0%
3812507 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 75.0 6.15e-01 100.0% 100.0%
3688419 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 58.0 6.44e-01 81.1% 100.0%
3420610 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 70.0 7.00e-01 96.2% 90.9%
3646821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 74.0 6.54e-01 100.0% 97.3%
3731690 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 69.0 6.04e-01 96.2% 62.5%
3323668 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 68.0 6.04e-01 90.6% 96.0%
3223791 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 70.0 6.77e-01 96.2% 86.7%
4593317 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 70.0 6.75e-01 96.2% 86.7%
3726840 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 74.0 6.54e-01 100.0% 98.7%
3770072 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 74.0 6.15e-01 100.0% 83.3%
4002233 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.81 72.0 4.08e-01 100.0% 10.3%
3208252 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 72.0 5.83e-01 100.0% 93.0%
3681526 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 63.0 6.47e-01 88.7% 90.0%
3730054 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 72.0 6.49e-01 96.2% 74.3%
3792735 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 72.0 4.26e-01 100.0% 22.1%
3666811 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 71.0 5.45e-01 100.0% 83.3%
3186415 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 72.0 6.12e-01 100.0% 96.5%
4019682 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 71.0 5.84e-01 100.0% 93.7%
3726245 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 64.0 6.62e-01 100.0% 94.0%
3259075 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 70.0 6.10e-01 100.0% 65.4%
3417160 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 71.0 5.79e-01 100.0% 54.7%
3184741 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 72.0 5.59e-01 100.0% 93.6%
3887744 109.4.1.1206 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › F-box-like 0.80 71.0 4.47e-01 100.0% 28.5%
3447143 145.1.1.45 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › LRR_At1g61320_AtMIF1, LRR_At5g56370 0.80 72.0 4.15e-01 98.1% 18.4%
4073598 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 68.0 6.42e-01 96.2% 81.5%
3273645 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 71.0 6.15e-01 100.0% 66.3%
3494629 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 66.0 6.77e-01 94.3% 100.0%
3209791 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 67.0 6.32e-01 96.2% 78.5%
3727111 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 67.0 6.16e-01 96.2% 75.7%
3468667 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.79 71.0 4.37e-01 100.0% 29.4%
3631996 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 69.0 5.80e-01 100.0% 95.6%
3299128 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 70.0 5.63e-01 100.0% 98.0%
3187719 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 65.0 5.87e-01 96.2% 69.3%
3399970 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.77 71.0 4.50e-01 100.0% 33.3%
3328883 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 66.0 5.85e-01 100.0% 97.5%
3236472 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 59.0 5.83e-01 92.5% 80.0%
3449875 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.77 69.0 4.88e-01 100.0% 63.2%
3924100 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 59.0 6.26e-01 86.8% 100.0%
3523576 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 67.0 5.77e-01 100.0% 88.2%
3568315 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.76 68.0 4.30e-01 100.0% 30.2%
None — 0.76 70.0 3.89e-01 100.0% 15.8%
3272640 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.76 67.0 4.19e-01 100.0% 25.7%
3680513 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 55.0 5.84e-01 84.9% 93.3%
3802856 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 64.0 6.38e-01 98.1% 92.7%
3837286 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 69.0 5.71e-01 100.0% 90.0%
3539114 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.75 67.0 4.40e-01 98.1% 36.7%
3915884 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.74 67.0 4.74e-01 98.1% 51.7%
3344585 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.74 63.0 5.96e-01 96.2% 100.0%
3680688 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.74 68.0 3.91e-01 100.0% 16.5%
None — 0.74 66.0 3.80e-01 100.0% 21.6%
4160836 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 66.0 4.01e-01 98.1% 25.0%
3219544 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.73 65.0 3.94e-01 96.2% 36.5%
3685862 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 59.0 6.08e-01 94.3% 98.0%
4012559 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.72 62.0 5.35e-01 100.0% 85.9%
3687689 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.72 62.0 3.75e-01 96.2% 29.1%
3189161 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.71 66.0 3.79e-01 100.0% 36.3%
4011546 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 61.0 4.45e-01 100.0% 97.3%
3724474 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.68 61.0 3.51e-01 100.0% 94.8%
3877694 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 54.0 5.22e-01 92.5% 88.3%
D2 medium residues 73-173
PDB
D3 medium residues 174-255
PDB