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F-box_incomplete_domain

Euk-Vir

Pandoravirus_salinus

F-box_incomplete_domain__YP_008437501__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008437501 ↗
Protein ID:
F-box_incomplete_domain
Kingdom:
euk

Quality

74.0 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-78
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.74 53.0 3.52e-01 98.6% 20.5%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.74 52.0 4.82e-01 73.2% 69.0%
4c0dC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.71 50.0 4.01e-01 74.6% 55.6%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.63 48.0 3.61e-01 80.3% 47.0%
2a5yB01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.62 38.0 3.28e-01 94.4% 39.4%
3l6aA01 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 49.0 3.65e-01 100.0% 37.9%
2ou3A01 1.10.3680.10 Mainly Alpha › Orthogonal Bundle › TerB-like › TerB-like 0.56 47.0 3.68e-01 93.0% 72.7%
8d0vA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.56 47.0 2.99e-01 95.8% 88.0%
7y4rB01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.54 48.0 4.22e-01 100.0% 83.0%
2cwqA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.53 47.0 3.91e-01 100.0% 77.8%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 4.33e-01 100.0% 89.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3437176 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 51.0 5.53e-01 77.5% 76.7%
3837286 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 55.0 5.04e-01 73.2% 81.1%
3672250 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.77 52.0 3.71e-01 93.0% 25.8%
3300009 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 53.0 5.05e-01 71.8% 90.0%
None — 0.74 47.0 2.82e-01 73.2% 10.1%
3309661 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 50.0 4.78e-01 83.1% 62.5%
3939710 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.70 50.0 5.30e-01 77.5% 81.5%
3191984 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 52.0 4.65e-01 100.0% 57.0%
3542973 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.68 46.0 2.88e-01 71.8% 13.7%
3695186 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.68 50.0 4.87e-01 100.0% 70.0%
3686935 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.67 53.0 4.80e-01 87.3% 89.0%
4471319 3455.1.1.1 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › RXLR 0.66 47.0 4.89e-01 93.0% 81.5%
4105167 3455.1.1.5 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › PexRD54_WY 0.66 45.0 4.33e-01 70.4% 76.2%
3208252 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.66 56.0 4.96e-01 93.0% 93.0%
None — 0.65 60.0 3.46e-01 100.0% 95.8%
4012559 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.64 48.0 4.59e-01 81.7% 85.9%
3345966 4133.1.1.0 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.60 43.0 4.29e-01 84.5% 72.0%
3230101 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.58 52.0 3.94e-01 100.0% 56.5%
4964621 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.55 48.0 4.16e-01 100.0% 76.5%
3378555 4133.1.1.2 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 0.54 47.0 3.50e-01 98.6% 62.2%
3234 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.53 47.0 4.01e-01 100.0% 83.8%
3211579 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.53 49.0 4.71e-01 100.0% 95.0%
4935976 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.52 45.0 3.88e-01 100.0% 82.6%
3806413 4133.1.1.0 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.50 45.0 3.49e-01 100.0% 69.0%