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F-box_incomplete_domain

Euk-Vir

Pandoravirus_salinus

F-box_incomplete_domain__YP_008438354__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008438354 ↗
Protein ID:
F-box_incomplete_domain
Kingdom:
euk

Quality

77.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 403-506
PDB
Domain cluster: rep: Ankyrin_repeat_incomplete_domain_containing_protein__YP_009482432__Pandoravirus_neocaledonia__2107708__D473-560
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4me2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 58.0 4.75e-01 87.5% 59.8%
4g26A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.69 60.0 4.29e-01 95.2% 50.0%
6t0bf00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.61 48.0 4.85e-01 84.6% 90.2%
3zn3A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 53.0 4.09e-01 100.0% 67.9%
1paqA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 47.0 4.17e-01 94.2% 94.4%
1ug3A02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 45.0 4.27e-01 92.3% 98.4%
3d3mA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 46.0 4.08e-01 97.1% 92.5%
7yb9A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 47.0 3.79e-01 100.0% 82.1%
2xqyA02 1.20.58.1340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 38.0 3.50e-01 75.0% 81.1%
2ho1B00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 46.0 3.72e-01 100.0% 63.8%
3rjvA02 1.25.40.740 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 33.0 3.85e-01 81.7% 100.0%
6orkA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 42.0 3.30e-01 89.4% 43.7%
4bwrA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 44.0 2.97e-01 97.1% 31.7%
3rc3A05 1.20.58.1080 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 40.0 3.90e-01 85.6% 74.3%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.51 37.0 3.79e-01 80.8% 79.6%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.51 37.0 2.95e-01 76.0% 65.3%
2katA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 42.0 4.10e-01 91.3% 82.6%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3802922 109.4.1.1274 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long 0.69 62.0 3.62e-01 99.0% 16.5%
3267273 109.3.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.68 57.0 5.57e-01 98.1% 83.5%
3813220 109.4.1.1293 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1 0.67 61.0 4.49e-01 100.0% 58.5%
3502612 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 60.0 5.24e-01 100.0% 91.6%
3673340 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.66 60.0 3.90e-01 100.0% 67.8%
3326710 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.66 60.0 4.99e-01 100.0% 87.8%
3647422 109.4.1.1274 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long 0.66 59.0 4.20e-01 99.0% 43.8%
3265998 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 61.0 4.82e-01 100.0% 93.2%
3825647 109.4.1.1356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, PPR_3, PPR_long 0.66 58.0 4.95e-01 99.0% 80.0%
3803650 109.4.1.1335 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif 0.66 59.0 3.65e-01 100.0% 27.5%
3440202 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.66 55.0 4.14e-01 92.3% 43.8%
3252035 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.65 60.0 5.11e-01 99.0% 80.6%
3299472 109.4.1.2982 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, PPR_long, Eplus_motif, E_motif 0.65 58.0 3.92e-01 100.0% 39.3%
3670493 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.65 58.0 4.10e-01 100.0% 52.9%
3464391 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.65 55.0 3.62e-01 94.2% 24.1%
3260808 109.3.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.65 58.0 4.36e-01 99.0% 45.1%
3358179 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.65 59.0 5.32e-01 100.0% 97.1%
3426987 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.65 58.0 4.64e-01 100.0% 66.3%
3433891 109.4.1.1275 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long, TPR_24 0.64 58.0 3.61e-01 100.0% 29.8%
3262155 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.64 58.0 4.25e-01 99.0% 62.6%
3361703 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.64 55.0 4.18e-01 95.2% 44.0%
3663038 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.64 56.0 3.61e-01 98.1% 26.9%
3805406 109.4.1.1331 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long, E_motif 0.63 57.0 4.90e-01 100.0% 83.6%
3494870 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 52.0 4.33e-01 91.3% 88.9%
3267275 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.63 57.0 4.66e-01 98.1% 61.6%
3382990 109.3.1.188 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF28568 0.63 57.0 4.10e-01 100.0% 75.9%
3323222 109.4.1.1282 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 0.63 53.0 5.22e-01 95.2% 94.8%
3669083 109.4.1.1274 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long 0.63 56.0 3.57e-01 99.0% 27.8%
3678535 109.4.1.1295 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_24 0.63 55.0 3.79e-01 100.0% 36.9%
3678079 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.63 56.0 4.09e-01 100.0% 49.0%
3438913 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.62 55.0 4.80e-01 100.0% 77.0%
3383731 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.62 56.0 4.42e-01 100.0% 58.1%
3365461 109.4.1.1292 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3 0.62 55.0 4.19e-01 100.0% 56.0%
3668228 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.62 54.0 4.36e-01 100.0% 77.7%
3671634 109.4.1.1280 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long 0.61 52.0 4.29e-01 97.1% 59.5%
3438223 109.4.1.1272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.61 54.0 3.56e-01 100.0% 29.7%
3827366 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.61 51.0 4.58e-01 92.3% 74.0%
3378289 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.61 54.0 4.73e-01 98.1% 92.9%
3826293 109.4.1.1296 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long, TPR_24 0.61 54.0 3.98e-01 100.0% 48.3%
3352832 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.61 53.0 4.84e-01 100.0% 94.5%
3823786 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.61 53.0 3.53e-01 97.1% 26.2%
3837917 109.4.1.1908 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long, E_motif 0.60 53.0 4.36e-01 100.0% 67.0%
3426138 109.4.1.1520 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, E_motif 0.60 53.0 3.97e-01 100.0% 50.4%
3298613 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.60 52.0 3.93e-01 99.0% 50.0%
3251932 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.60 52.0 3.99e-01 98.1% 61.2%
3367891 109.4.1.1272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.59 52.0 3.77e-01 100.0% 42.8%
3273273 109.3.1.171 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF29011 0.59 51.0 4.35e-01 98.1% 62.9%
3324682 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.58 51.0 4.65e-01 100.0% 92.4%
3384110 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.58 51.0 4.39e-01 100.0% 77.1%
3318529 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.56 48.0 3.22e-01 99.0% 35.6%
3973909 109.4.1.109 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.53 45.0 3.89e-01 96.2% 63.4%