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F-box_incomplete_domain_containing_protein

Euk-Vir

Pandoravirus_dulcis

F-box_incomplete_domain_containing_protein__YP_008319490__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_008319490 ↗
Protein ID:
F-box_incomplete_domain_containing_protein
Kingdom:
euk

Quality

74.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 97-231
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.70 28.0 3.75e-01 77.8% 67.6%
3wx4A00 3.30.70.2770 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 28.0 3.27e-01 71.9% 68.4%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3789371 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.64 31.0 4.02e-01 72.6% 84.3%
3829017 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.60 27.0 3.50e-01 85.2% 73.3%
3218266 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.54 41.0 3.12e-01 82.2% 71.5%
4315272 3281.1.1.3 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,Proton_antipo_C 0.53 47.0 3.01e-01 99.3% 77.6%
4958102 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.53 24.0 3.33e-01 85.2% 87.7%
4854404 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.53 42.0 3.00e-01 85.9% 73.6%
3636298 5001.1.1.6 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin 0.52 37.0 3.15e-01 73.3% 76.2%
3239569 5001.1.1.25 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Sru 0.52 38.0 2.99e-01 77.0% 74.3%
5041036 11.1.1.1409 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4129 0.51 37.0 3.45e-01 74.1% 95.3%
4047429 3281.1.1.3 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,Proton_antipo_C 0.51 42.0 2.78e-01 92.6% 54.7%
4299747 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.51 42.0 2.91e-01 93.3% 60.6%
4027270 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 41.0 3.43e-01 88.1% 83.7%
D2 medium residues 33-96
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 28.4 1.60e-06 57.8% 68.1%
PF00646.39 F-box 22.8 8.90e-05 54.7% 72.1%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.72 55.0 3.68e-01 84.4% 80.3%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.54 38.0 3.60e-01 73.4% 70.1%
4v19W00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.53 42.0 3.20e-01 90.6% 60.8%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 37.0 2.65e-01 100.0% 23.1%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.21e-01 90.6% 65.8%
5x8tT00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.52 39.0 3.12e-01 90.6% 37.5%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.52 41.0 3.19e-01 90.6% 85.0%
6canA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 39.0 2.63e-01 87.5% 49.3%
1dw9A02 3.30.1160.10 Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain 0.52 29.0 2.90e-01 73.4% 45.6%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.39e-01 89.1% 62.6%
3gw6A03 3.30.2460.10 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain 0.51 31.0 3.25e-01 92.2% 66.7%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 37.0 2.48e-01 79.7% 32.4%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 42.0 3.67e-01 98.4% 70.8%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3675534 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 52.0 4.87e-01 70.3% 93.8%
4019682 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 55.0 4.79e-01 75.0% 100.0%
None — 0.76 58.0 3.47e-01 82.8% 29.2%
None — 0.75 55.0 3.24e-01 78.1% 28.1%
3236496 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.72 54.0 3.60e-01 81.2% 62.7%
3299128 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 61.0 5.31e-01 100.0% 99.0%
3189161 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 56.0 3.35e-01 87.5% 27.6%
3399970 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.69 57.0 3.83e-01 90.6% 52.1%
3463234 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.68 50.0 5.41e-01 96.9% 90.9%
3376376 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.67 55.0 3.87e-01 92.2% 55.7%
3301911 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 53.0 4.85e-01 87.5% 100.0%
3685862 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.66 48.0 5.26e-01 98.4% 100.0%
3216211 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.66 46.0 4.75e-01 98.4% 78.3%
3803880 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.65 55.0 3.36e-01 92.2% 25.5%
3446890 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.64 51.0 5.12e-01 100.0% 84.6%
3300009 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.63 54.0 5.05e-01 93.8% 98.8%
3425357 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.63 54.0 5.09e-01 93.8% 100.0%
3812507 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.63 55.0 4.82e-01 96.9% 97.8%
3631167 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.62 51.0 4.69e-01 92.2% 100.0%
3939710 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.62 53.0 5.35e-01 93.8% 100.0%
3664364 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.61 50.0 5.15e-01 98.4% 96.7%
3751898 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.61 53.0 5.14e-01 92.2% 100.0%
3786528 109.4.1.87 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6 0.61 49.0 2.80e-01 95.3% 16.5%
4160836 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.61 55.0 3.48e-01 98.4% 24.7%
3915884 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.61 56.0 4.15e-01 98.4% 51.0%
None — 0.61 53.0 3.30e-01 100.0% 35.9%
3439545 207.1.1.99 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At5g56370 0.61 53.0 3.19e-01 98.4% 21.6%
3539114 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.61 55.0 3.75e-01 98.4% 36.2%
3419446 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.60 52.0 5.09e-01 95.3% 92.9%
4061408 109.4.1.1731 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N 0.60 49.0 3.03e-01 96.9% 16.5%
3743393 59.1.4.2 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.60 35.0 2.12e-01 85.9% 8.4%
3901459 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 49.0 2.84e-01 95.3% 31.7%
3425088 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.60 50.0 5.00e-01 96.9% 95.4%
3449733 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.60 53.0 3.19e-01 100.0% 18.7%
3236279 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 49.0 3.21e-01 98.4% 22.1%
3236774 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 47.0 3.07e-01 98.4% 20.9%
3561667 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 46.0 2.83e-01 95.3% 58.4%
3697864 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.55 47.0 3.99e-01 96.9% 100.0%
4029228 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 39.0 2.88e-01 78.1% 98.9%
4002132 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 37.0 2.41e-01 71.9% 76.0%
4002747 109.4.1.1812 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR, RIH_assoc 0.53 43.0 2.33e-01 95.3% 6.6%
4028937 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.52 41.0 2.43e-01 95.3% 13.6%
3242274 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.52 44.0 4.25e-01 95.3% 81.3%
5078830 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.51 34.0 2.36e-01 81.2% 17.4%