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F-box_incomplete_domain_containing_protein

Euk-Vir

Pandoravirus_macleodensis

F-box_incomplete_domain_containing_protein__YP_009481190__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481190 ↗
Protein ID:
F-box_incomplete_domain_containing_protein
Kingdom:
euk

Quality

71.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 353-391_420-457
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009481115__Pandoravirus_macleodensis__2107707__D372-450
D2 medium residues 458-538
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1juqC00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.74 65.0 5.39e-01 100.0% 77.2%
1paqA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.72 64.0 5.14e-01 100.0% 68.3%
1ihbA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.71 65.0 5.20e-01 100.0% 53.2%
3ljnA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.71 63.0 4.25e-01 100.0% 34.2%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.68 56.0 5.23e-01 91.4% 82.2%
2b6cA01 1.20.1660.10 Mainly Alpha › Up-down Bundle › ARM repeat fold › Hypothetical protein (EF3068) 0.67 59.0 5.31e-01 100.0% 93.1%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.66 48.0 4.54e-01 77.8% 84.0%
3zrhA01 1.25.40.560 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 50.0 4.76e-01 81.5% 82.3%
3ljcA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 32.0 2.76e-01 84.0% 28.6%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.64 52.0 4.98e-01 92.6% 99.0%
2cwqA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.63 46.0 3.98e-01 76.5% 69.0%
5cqgA05 1.10.357.90 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Telomerase reverse transcriptase (TERT), thumb domain 0.63 54.0 4.21e-01 100.0% 76.7%
4o6mA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.62 53.0 4.06e-01 96.3% 69.2%
2g1pA02 1.10.1020.10 Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 0.62 42.0 3.95e-01 70.4% 60.0%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.60 43.0 4.17e-01 76.5% 85.1%
2aw6A02 1.25.40.400 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 48.0 3.64e-01 98.8% 63.3%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4011250 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.82 76.0 4.51e-01 100.0% 17.0%
3862077 145.1.1.33 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › PF27091 0.79 54.0 5.80e-01 90.1% 82.9%
3276619 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.77 68.0 4.17e-01 100.0% 17.0%
3519832 109.3.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.71 63.0 3.92e-01 100.0% 20.0%
3421464 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 62.0 4.62e-01 100.0% 41.9%
3676558 109.4.1.1261 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.70 63.0 4.70e-01 100.0% 42.0%
3456203 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.69 58.0 4.71e-01 98.8% 48.4%
3872472 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.68 62.0 3.89e-01 100.0% 25.6%
3940302 109.54.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.68 56.0 4.58e-01 91.4% 53.3%
3999647 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 58.0 5.28e-01 100.0% 76.5%
4981494 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.67 56.0 5.08e-01 93.8% 91.8%
3752567 109.4.1.1382 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, TPR_24 0.67 61.0 3.59e-01 100.0% 14.7%
3331058 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.66 58.0 3.73e-01 100.0% 23.1%
3422293 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.66 54.0 4.96e-01 90.1% 70.5%
3347297 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.65 57.0 3.81e-01 100.0% 24.5%
3661216 109.4.1.1261 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.64 56.0 4.10e-01 100.0% 37.4%
5023700 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.64 50.0 4.76e-01 85.2% 97.9%
3348296 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 54.0 4.99e-01 100.0% 74.3%
3339600 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 54.0 5.04e-01 100.0% 78.0%
3690759 109.54.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp21 0.62 53.0 4.10e-01 98.8% 46.0%
3649715 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 54.0 4.42e-01 98.8% 63.9%
3303267 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 53.0 4.50e-01 100.0% 64.8%
3234 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.61 44.0 3.94e-01 76.5% 71.8%
3372168 109.4.1.1374 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, TPR_24 0.61 50.0 4.83e-01 100.0% 78.9%
3813586 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.60 52.0 4.77e-01 100.0% 79.1%
4028971 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.60 52.0 4.41e-01 100.0% 71.4%
3992850 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.58 49.0 4.62e-01 97.5% 90.0%
3648014 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.56 41.0 4.22e-01 77.8% 100.0%
3738540 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.56 31.0 3.07e-01 92.6% 48.9%
3171392 1073.1.1.10 ↗ alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Sec66 0.53 39.0 3.48e-01 81.5% 82.3%
3685439 109.54.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.53 44.0 2.61e-01 100.0% 9.6%
D3 medium residues 539-593
PDB