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F-box_incomplete_domain_containing_protein

Euk-Vir

Pandoravirus_macleodensis

F-box_incomplete_domain_containing_protein__YP_009481371__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481371 ↗
Protein ID:
F-box_incomplete_domain_containing_protein
Kingdom:
euk

Quality

64.9 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 44-98
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jkzA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 47.0 3.34e-01 81.8% 60.9%
3ivpD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 37.0 3.36e-01 78.2% 49.3%
1lkvX02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.56 43.0 3.47e-01 94.5% 40.9%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 40.0 3.71e-01 85.5% 98.6%
2nxpB00 1.25.40.500 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain 0.51 39.0 3.07e-01 90.9% 66.9%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3215069 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 57.0 6.22e-01 72.7% 82.2%
3434959 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 59.0 6.45e-01 83.6% 93.3%
3324307 145.1.1.5 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_5 0.80 57.0 5.37e-01 76.4% 63.1%
3810013 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 53.0 5.07e-01 78.2% 62.5%
3238761 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.77 50.0 5.62e-01 72.7% 92.5%
4021018 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.76 53.0 2.94e-01 72.7% 6.0%
4422459 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 54.0 5.01e-01 76.4% 65.7%
3390129 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.75 61.0 3.96e-01 89.1% 23.3%
3396250 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 57.0 5.39e-01 83.6% 72.3%
3640174 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.73 53.0 4.75e-01 76.4% 65.3%
3439829 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 62.0 5.29e-01 94.5% 81.1%
3191984 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 62.0 5.07e-01 94.5% 54.0%
3399970 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.73 61.0 3.91e-01 90.9% 22.9%
3464778 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 54.0 4.74e-01 83.6% 89.4%
3419446 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 56.0 5.23e-01 92.7% 68.6%
3725291 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 61.0 5.18e-01 100.0% 73.7%
3686935 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.71 60.0 4.91e-01 94.5% 78.0%
3301911 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 55.0 4.76e-01 85.5% 89.4%
4012387 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.69 57.0 5.21e-01 94.5% 73.3%
4012559 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.68 55.0 4.84e-01 92.7% 87.1%
3654608 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.65 50.0 4.01e-01 89.1% 45.8%
3467883 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.64 53.0 5.20e-01 100.0% 91.7%
3663501 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.63 48.0 4.28e-01 89.1% 64.7%
3211579 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.61 54.0 4.77e-01 100.0% 95.0%
3720343 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.57 51.0 4.38e-01 100.0% 94.1%
4864293 601.15.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › Proteasome activator reg(alpha) › Proteasome activator reg(alpha) › BPA 0.54 37.0 3.08e-01 72.7% 40.4%
D2 medium residues 242-357
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lpzA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 61.0 4.49e-01 92.2% 40.4%
4leuA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.69 64.0 5.45e-01 100.0% 68.7%
4ri6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 46.0 4.63e-01 72.4% 93.3%
1elkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 57.0 5.21e-01 96.6% 85.0%
6t0bf00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.64 50.0 5.25e-01 87.1% 94.1%
4me2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 56.0 4.78e-01 99.1% 73.7%
6u3wB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 49.0 3.71e-01 87.9% 34.0%
3eslA02 1.25.40.930 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 48.0 4.76e-01 82.8% 81.5%
4eadA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.59 48.0 4.97e-01 89.7% 100.0%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.59 33.0 4.15e-01 72.4% 95.5%
1a17A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 42.0 3.82e-01 81.9% 55.3%
2qfcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 49.0 3.79e-01 99.1% 48.2%
1iygA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 44.0 4.32e-01 87.1% 86.5%
3ns4A00 1.10.357.110 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Vacuolar protein sorting-associated protein 53, C-terminus 0.57 48.0 4.09e-01 96.6% 74.1%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 47.0 4.05e-01 90.5% 84.4%
1lxlA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.55 40.0 3.27e-01 76.7% 44.8%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.55 40.0 3.78e-01 92.2% 63.6%
2dbaA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 41.0 4.11e-01 84.5% 80.5%
2xevB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 43.0 4.30e-01 93.1% 85.5%
6wb9201 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 47.0 3.56e-01 100.0% 45.3%
2fbnA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 42.0 3.91e-01 99.1% 71.9%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.50 41.0 4.12e-01 88.8% 94.2%
7utzR02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 40.0 3.10e-01 87.1% 76.9%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3303906 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.73 57.0 5.47e-01 91.4% 71.1%
3659118 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.73 62.0 5.63e-01 92.2% 68.4%
3355638 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 62.0 5.77e-01 95.7% 91.7%
3804465 109.4.1.1273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.70 55.0 4.46e-01 92.2% 43.6%
3326711 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 56.0 5.30e-01 92.2% 72.6%
3319137 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 60.0 5.64e-01 92.2% 77.9%
3341298 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 63.0 5.73e-01 99.1% 82.6%
3678380 109.4.1.1282 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 0.70 60.0 5.30e-01 95.7% 77.1%
3817611 109.4.1.1293 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1 0.69 60.0 5.09e-01 95.7% 70.8%
3357667 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.69 59.0 5.40e-01 92.2% 71.3%
3441099 109.4.1.1293 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1 0.68 55.0 5.36e-01 92.2% 80.0%
3645686 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.68 59.0 4.89e-01 95.7% 64.3%
3663833 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.68 60.0 4.57e-01 96.6% 49.4%
3653482 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.68 59.0 4.69e-01 95.7% 57.0%
3676404 109.4.1.184 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1 0.67 55.0 5.61e-01 92.2% 92.7%
3372578 109.4.1.1305 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long, TPR_24 0.67 60.0 4.03e-01 99.1% 36.7%
3428419 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.67 59.0 5.13e-01 95.7% 74.9%
3346822 109.4.1.1261 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.67 59.0 4.57e-01 96.6% 52.5%
3345874 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.67 54.0 4.87e-01 92.2% 61.8%
3831463 109.4.1.1274 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long 0.67 59.0 3.68e-01 98.3% 29.6%
3451318 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.67 58.0 4.64e-01 94.8% 58.7%
3645209 109.4.1.1382 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, TPR_24 0.67 59.0 4.70e-01 97.4% 69.1%
3421024 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.66 57.0 4.70e-01 94.8% 60.9%
3270273 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 58.0 3.53e-01 96.6% 27.9%
4367803 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.66 60.0 4.18e-01 100.0% 51.2%
3362916 109.4.1.1273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.66 60.0 4.75e-01 100.0% 71.5%
3821619 109.4.1.1277 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 0.66 59.0 5.41e-01 100.0% 84.5%
3823525 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.65 57.0 4.51e-01 97.4% 51.6%
3469073 109.4.1.1282 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 0.65 57.0 4.50e-01 98.3% 61.6%
3319235 109.4.1.1282 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 0.65 58.0 3.62e-01 98.3% 21.1%
3425479 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.65 55.0 5.16e-01 92.2% 97.2%
3700682 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 53.0 5.52e-01 90.5% 100.0%
3353605 109.4.1.1274 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long 0.63 56.0 3.80e-01 98.3% 35.9%
3271203 109.4.1.276 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EDC4_C 0.63 56.0 5.34e-01 96.6% 91.1%
3655717 109.4.1.1146 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB 0.63 53.0 4.28e-01 91.4% 49.3%
3316394 109.4.1.1292 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3 0.63 56.0 4.93e-01 98.3% 73.5%
3897461 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 52.0 4.76e-01 93.1% 68.8%
3344406 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 54.0 4.33e-01 97.4% 66.1%
3362622 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.61 51.0 3.86e-01 91.4% 51.6%
3679823 109.4.1.1292 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3 0.61 54.0 3.70e-01 99.1% 30.6%
3384022 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.61 54.0 4.80e-01 100.0% 72.9%
3654094 109.4.1.1293 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1 0.61 53.0 4.68e-01 100.0% 68.3%
3834386 109.4.1.1261 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.59 51.0 4.35e-01 95.7% 61.0%
3309503 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.58 51.0 4.94e-01 99.1% 93.3%
4645394 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.58 46.0 4.33e-01 88.8% 70.0%
3821793 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.57 49.0 4.68e-01 99.1% 92.1%
3762938 109.4.1.2870 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_16, ARM_TT21, ARM_TT21_4th 0.56 44.0 4.48e-01 92.2% 87.8%
3832674 109.4.1.202 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.55 46.0 3.75e-01 93.1% 56.0%
3867372 109.4.1.3178 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_16, ARM_TT21, ARM_TT21_4th 0.54 45.0 4.32e-01 94.8% 94.8%
D3 medium residues 358-451_471-507
PDB