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F-box_incomplete_domain_containing_protein

Euk-Vir

Pandoravirus_neocaledonia

F-box_incomplete_domain_containing_protein__YP_009482061__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482061 ↗
Protein ID:
F-box_incomplete_domain_containing_protein
Kingdom:
euk

Quality

70.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 56-132
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00646.39 best F-box 24.6 2.40e-05 53.2% 83.7%
PF12937.13 F-box-like 24.8 2.00e-05 49.4% 74.5%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.76 55.0 3.75e-01 100.0% 22.4%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.69 49.0 4.70e-01 74.0% 77.0%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.68 50.0 4.58e-01 77.9% 93.0%
3bjdA02 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.50 38.0 2.83e-01 83.1% 61.8%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4022899 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 51.0 4.63e-01 70.1% 85.0%
3730967 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 51.0 4.53e-01 70.1% 78.1%
3682581 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.75 48.0 2.92e-01 83.1% 10.7%
3652308 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.74 52.0 3.16e-01 72.7% 16.3%
2774506 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 49.0 5.55e-01 79.2% 89.8%
3636704 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 50.0 4.32e-01 70.1% 100.0%
3407033 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 50.0 5.06e-01 70.1% 100.0%
3901480 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 51.0 5.09e-01 74.0% 96.2%
4023099 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 49.0 4.27e-01 70.1% 87.0%
3711287 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.72 51.0 4.58e-01 74.0% 70.2%
3613821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 50.0 5.21e-01 72.7% 100.0%
3184741 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 49.0 4.33e-01 71.4% 96.4%
3726840 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 50.0 5.09e-01 74.0% 98.7%
None — 0.71 46.0 2.85e-01 74.0% 11.4%
3680688 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.70 48.0 2.96e-01 70.1% 16.9%
3490408 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 49.0 4.27e-01 74.0% 100.0%
3194125 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 49.0 4.87e-01 74.0% 100.0%
3903969 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 48.0 4.62e-01 74.0% 88.9%
3195891 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.68 50.0 4.48e-01 77.9% 87.0%
3507975 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.68 48.0 3.18e-01 74.0% 26.5%
4012559 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.68 52.0 5.07e-01 81.8% 91.8%
3811913 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.67 41.0 4.98e-01 74.0% 96.0%
3419446 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.67 44.0 4.57e-01 81.8% 74.3%
3446581 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 47.0 4.61e-01 74.0% 98.8%
3236774 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 57.0 3.74e-01 100.0% 31.4%
3856479 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.63 45.0 2.79e-01 75.3% 13.3%
3725291 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.63 54.0 5.05e-01 98.7% 76.8%
3301272 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.59 54.0 4.75e-01 100.0% 81.8%
3242274 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.59 48.0 4.88e-01 100.0% 92.0%
3226258 3180.1.1.2 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › F-box 0.54 47.0 4.34e-01 100.0% 95.2%