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F-box_incomplete_domain_containing_protein

Euk-Vir

Pandoravirus_neocaledonia

F-box_incomplete_domain_containing_protein__YP_009482064__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482064 ↗
Protein ID:
F-box_incomplete_domain_containing_protein
Kingdom:
euk

Quality

72.2 mean pLDDT

Taxonomy

TaxID: 2107708

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 357-395_414-442
PDB
D2 medium residues 443-506
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jxtA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.72 62.0 4.97e-01 98.4% 59.2%
7kb2B01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.70 61.0 4.46e-01 100.0% 43.5%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.69 59.0 5.12e-01 96.9% 77.2%
3hraA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.69 57.0 4.11e-01 95.3% 39.7%
8gpsA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.68 58.0 5.00e-01 100.0% 64.8%
3htmA02 6.10.250.3030 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 41.0 4.86e-01 73.4% 97.5%
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.66 43.0 4.83e-01 76.6% 95.7%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.64 43.0 4.00e-01 70.3% 85.5%
4bx8A04 1.25.40.850 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Sec1/Munc18 (SM) protein, domain 3b 0.64 53.0 4.82e-01 98.4% 84.8%
4evfA01 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.60 51.0 4.95e-01 96.9% 100.0%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.60 44.0 3.81e-01 81.2% 79.8%
2j6vA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.57 48.0 3.24e-01 100.0% 46.1%
4akgA01 1.20.1050.130 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 46.0 3.36e-01 98.4% 43.8%
3mw6B00 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.51 38.0 3.37e-01 79.7% 85.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3392785 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.76 59.0 4.74e-01 85.9% 43.2%
3903932 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.72 58.0 4.48e-01 89.1% 44.1%
3926486 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.72 55.0 4.65e-01 84.4% 50.5%
3703244 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.69 55.0 4.42e-01 87.5% 59.2%
3387828 531.2.1.2 alpha arrays › Domains of FliG › Middle domain of FliG › Middle domain of FliG › MgtE_N 0.67 54.0 5.56e-01 90.6% 98.3%
3806093 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.66 47.0 5.13e-01 81.2% 98.0%
4500280 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.65 48.0 4.39e-01 79.7% 78.8%
3992850 109.27.1.0 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.61 52.0 4.60e-01 100.0% 83.0%
3798925 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.58 40.0 3.71e-01 71.9% 84.7%
4325839 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 42.0 4.11e-01 78.1% 91.4%
D3 medium residues 507-593
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u6gC00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.72 65.0 3.60e-01 100.0% 10.3%
2qk1A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.70 62.0 4.56e-01 100.0% 52.3%
1hx8A01 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.69 59.0 5.29e-01 92.0% 100.0%
5vjcA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.69 61.0 4.37e-01 100.0% 73.7%
5cl3A00 1.25.10.90 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › 0.69 60.0 4.50e-01 100.0% 42.4%
2db0B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.69 57.0 4.24e-01 94.3% 45.0%
6igxD01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.68 60.0 4.30e-01 100.0% 46.9%
1b3uA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.68 61.0 3.69e-01 100.0% 19.6%
1vdyA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 60.0 5.08e-01 97.7% 87.1%
4ffbC00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.67 58.0 4.37e-01 100.0% 52.4%
6xu2A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.67 60.0 3.61e-01 100.0% 22.4%
1gw5B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.67 55.0 3.41e-01 94.3% 16.9%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 47.0 4.23e-01 74.7% 64.2%
4y5jA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.67 58.0 4.37e-01 100.0% 49.8%
6tblB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 57.0 5.28e-01 96.6% 98.2%
3l9tA02 1.25.40.290 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains 0.65 57.0 5.15e-01 97.7% 85.6%
3ltjA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 57.0 4.49e-01 100.0% 46.1%
2w3cA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 57.0 4.09e-01 100.0% 44.9%
3lsjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 45.0 3.77e-01 72.4% 66.7%
5ewpA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 56.0 4.11e-01 96.6% 52.3%
4g3aB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 57.0 4.24e-01 100.0% 44.0%
5dn7A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 57.0 4.19e-01 100.0% 46.7%
3sl9B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 57.0 4.63e-01 100.0% 68.5%
6idxA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 57.0 4.26e-01 100.0% 58.0%
1xm9A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.63 54.0 3.52e-01 95.4% 26.8%
4rv1F00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 55.0 3.59e-01 100.0% 29.2%
1dk5A02 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.62 43.0 4.62e-01 71.3% 100.0%
7dvqK01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 54.0 4.37e-01 100.0% 64.7%
3vwaA03 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 53.0 3.76e-01 100.0% 38.3%
4d49A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 53.0 3.96e-01 100.0% 46.6%
3c5wA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 53.0 4.01e-01 100.0% 48.2%
4u2xF00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 54.0 4.34e-01 100.0% 73.1%
3o2tA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 51.0 3.58e-01 100.0% 41.4%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.57 48.0 4.01e-01 94.3% 64.3%
2b6cA02 1.25.40.290 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains 0.57 49.0 4.79e-01 100.0% 99.0%
4b7hA03 1.20.1370.60 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › 0.56 41.0 3.74e-01 75.9% 80.0%
2xqyA02 1.20.58.1340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 45.0 3.90e-01 89.7% 97.2%
8carA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.55 48.0 3.24e-01 100.0% 31.0%
1kt1A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 44.0 3.68e-01 94.3% 63.3%
4o1jA00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.51 42.0 3.36e-01 95.4% 84.3%
2lt3A01 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.50 41.0 3.96e-01 90.8% 87.0%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4412723 109.4.1.170 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CLASP_N 0.73 66.0 3.77e-01 100.0% 13.2%
3191853 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 64.0 4.58e-01 100.0% 51.9%
4975999 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.73 65.0 5.23e-01 100.0% 60.0%
3700945 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 64.0 4.35e-01 100.0% 34.9%
3370927 109.4.1.935 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TOR1L1_N 0.71 64.0 4.13e-01 100.0% 33.1%
3325286 109.4.1.170 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CLASP_N 0.70 62.0 4.53e-01 100.0% 49.6%
3873944 109.4.1.1370 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, XMAP215_CLASP_TOG 0.68 60.0 3.35e-01 100.0% 9.7%
4939043 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.68 58.0 4.69e-01 94.3% 57.6%
2390636 109.4.1.1283 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_PBS, HEAT_2 0.67 57.0 4.48e-01 94.3% 46.5%
5021502 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.67 60.0 4.98e-01 100.0% 62.6%
3618769 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 47.0 4.03e-01 73.6% 64.3%
3187822 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 60.0 4.64e-01 100.0% 54.7%
4951694 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.66 60.0 5.07e-01 100.0% 67.1%
4931535 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.66 59.0 5.00e-01 100.0% 85.5%
3277138 109.4.1.926 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FH3_FHOD1-3 0.65 54.0 4.11e-01 93.1% 50.0%
1626951 109.4.1.1283 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_PBS, HEAT_2 0.65 57.0 5.29e-01 100.0% 80.5%
3834116 109.4.1.935 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TOR1L1_N 0.65 58.0 3.71e-01 100.0% 25.5%
2856770 109.4.1.1358 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_PBS, HEAT_EZ, HEAT_2 0.65 57.0 5.08e-01 100.0% 69.3%
4996316 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.65 58.0 3.86e-01 100.0% 35.7%
3683920 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 54.0 3.43e-01 100.0% 22.8%
4890285 109.4.1.1283 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_PBS, HEAT_2 0.62 47.0 5.11e-01 96.6% 98.6%
3607471 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 54.0 4.57e-01 100.0% 80.0%
3788457 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 53.0 3.80e-01 100.0% 41.0%
4022809 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 54.0 3.39e-01 100.0% 23.0%
4302518 109.4.1.1259 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_PBS, HEAT_2 0.62 54.0 4.38e-01 94.3% 60.6%
4930061 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.62 54.0 4.59e-01 100.0% 64.7%
3536417 626.1.1.0 alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) 0.62 54.0 3.14e-01 100.0% 14.9%
4920664 109.4.1.1259 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_PBS, HEAT_2 0.62 45.0 4.82e-01 86.2% 90.4%
3886883 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 52.0 4.29e-01 98.9% 62.5%
4182414 109.4.1.1283 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_PBS, HEAT_2 0.61 51.0 3.56e-01 96.6% 28.3%
4079733 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.60 52.0 3.69e-01 96.6% 33.5%
3593327 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 54.0 3.26e-01 100.0% 19.3%
3224622 109.4.1.2 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm 0.60 52.0 4.01e-01 96.6% 56.0%
3427591 109.4.1.1191 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_LIN_C 0.60 54.0 4.79e-01 100.0% 74.4%
3998631 109.4.1.223 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Aquarius_N_1st 0.59 47.0 3.36e-01 89.7% 33.9%
4979939 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.58 50.0 4.08e-01 100.0% 51.7%
4959932 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.58 49.0 4.09e-01 100.0% 65.9%
4960362 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.57 47.0 4.06e-01 94.3% 59.3%
4976182 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.57 47.0 3.95e-01 96.6% 53.9%
5044861 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 46.0 4.17e-01 94.3% 68.5%
4957648 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.56 50.0 4.43e-01 100.0% 70.3%
4973730 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.56 49.0 3.59e-01 100.0% 37.6%
1680217 109.4.1.1283 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_PBS, HEAT_2 0.55 48.0 4.38e-01 100.0% 76.0%
5065726 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.55 48.0 3.31e-01 100.0% 27.9%
None 0.55 48.0 4.60e-01 100.0% 91.1%
4978742 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.55 47.0 4.05e-01 100.0% 61.3%