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F-box_incomplete_domain_containing_protein

Euk-Vir

Pandoravirus_neocaledonia

F-box_incomplete_domain_containing_protein__YP_009482296__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482296 ↗
Protein ID:
F-box_incomplete_domain_containing_protein
Kingdom:
euk

Quality

65.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 124-235_268-281
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_980__YP_009482590__Pandoravirus_neocaledonia__2107708__D88-215
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4me2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 53.0 4.62e-01 94.4% 76.3%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 55.0 4.13e-01 99.2% 53.9%
4r0zA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 53.0 3.51e-01 96.0% 31.1%
7ldgA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 54.0 4.57e-01 99.2% 78.2%
7zcvA02 1.25.40.400 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 52.0 4.44e-01 93.7% 79.0%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.60 53.0 4.50e-01 96.0% 89.9%
3vwaA03 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 52.0 4.02e-01 97.6% 54.0%
1e5rB02 1.10.1720.10 Mainly Alpha › Orthogonal Bundle › Proline Oxidase; Chain: A, Domain 2 › L-proline 3-hydroxylase, C-terminal domain 0.60 36.0 4.20e-01 77.8% 88.1%
3o4zA02 1.25.40.720 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tel2 C-terminal domain 0.59 52.0 4.60e-01 100.0% 86.1%
5cwkA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 48.0 4.40e-01 88.9% 80.4%
1is9A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.58 51.0 3.76e-01 100.0% 73.7%
3deoA02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.57 48.0 4.63e-01 92.9% 92.5%
1sqmA04 1.25.40.320 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal domain 0.57 50.0 4.80e-01 100.0% 95.3%
3cf6E05 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.55 41.0 3.32e-01 77.8% 59.3%
1yvwA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.50 30.0 3.37e-01 93.7% 78.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3577177 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 53.0 4.63e-01 84.9% 66.2%
3169559 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 58.0 3.80e-01 99.2% 25.3%
3271428 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.64 55.0 4.16e-01 92.9% 53.0%
3611582 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 48.0 4.33e-01 82.5% 78.2%
None — 0.61 54.0 3.89e-01 99.2% 41.6%
3368054 109.4.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF 0.60 54.0 3.82e-01 100.0% 46.5%
3249619 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.60 51.0 4.68e-01 92.9% 77.6%
None — 0.60 54.0 3.75e-01 99.2% 36.1%
3675671 109.4.1.1265 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF, PUF_NOP9 0.60 53.0 3.68e-01 99.2% 50.8%
4556742 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.59 34.0 3.88e-01 84.1% 76.7%
3384796 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.59 44.0 4.85e-01 82.5% 99.0%
3354290 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.59 51.0 3.67e-01 96.8% 34.5%
1204157 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.59 51.0 4.91e-01 96.0% 90.1%
3717530 109.4.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm 0.58 49.0 4.36e-01 94.4% 83.2%
3438126 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 51.0 4.98e-01 98.4% 95.0%
3826259 109.4.1.1293 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1 0.58 44.0 4.31e-01 85.7% 74.8%
5072174 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.57 51.0 3.83e-01 99.2% 50.9%
3834714 109.4.1.1295 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_24 0.57 50.0 4.03e-01 100.0% 51.5%
3166742 109.4.1.460 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_C 0.56 49.0 4.28e-01 98.4% 86.0%
3991215 109.4.1.649 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4807 0.56 39.0 3.56e-01 72.2% 59.0%
4267135 633.2.1.0 ↗ alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein 0.53 30.0 3.48e-01 87.3% 78.8%
D2 medium residues 282-410
PDB
Domain cluster: rep: F-box_incomplete_domain_containing_protein__YP_009481371__Pandoravirus_macleodensis__2107707__D242-357
D3 medium residues 411-487
PDB
D4 medium residues 488-552
PDB