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F-box_incomplete_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

F-box_incomplete_domain_containing_protein__YP_009483029__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483029 ↗
Protein ID:
F-box_incomplete_domain_containing_protein
Kingdom:
euk

Quality

70.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-59
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 35.8 7.30e-09 88.4% 74.5%
PF00646.39 F-box 27.5 2.90e-06 81.4% 76.7%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.89 70.0 7.38e-01 86.0% 100.0%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.88 80.0 4.78e-01 100.0% 17.4%
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.87 76.0 7.45e-01 100.0% 95.7%
3ogkB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.84 67.0 6.85e-01 88.4% 90.2%
4i6jB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.82 70.0 7.06e-01 97.7% 100.0%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.81 71.0 5.42e-01 100.0% 52.5%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.81 69.0 5.57e-01 100.0% 52.9%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.79 68.0 5.44e-01 100.0% 93.2%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.79 70.0 4.66e-01 100.0% 27.1%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.76 65.0 5.03e-01 100.0% 49.0%
2l9bA00 1.25.40.630 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.75 65.0 5.09e-01 97.7% 75.8%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.70 54.0 5.07e-01 90.7% 93.0%
4c0dC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.70 61.0 4.22e-01 100.0% 30.3%
2i7nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 42.0 2.89e-01 88.4% 18.7%
3c2gA02 1.10.10.1630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sys-1 C-terminal domain-like 0.64 54.0 4.72e-01 100.0% 80.9%
1wixA01 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.58 45.0 3.29e-01 97.7% 94.8%
2aswA00 1.10.8.500 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase 0.57 47.0 4.45e-01 100.0% 83.9%
2xcjA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 39.0 3.18e-01 72.1% 41.7%
4abxA02 6.10.140.1090 Special › Helix non-globular › Helix Hairpins › 0.55 38.0 3.14e-01 72.1% 47.1%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.53 36.0 2.45e-01 72.1% 91.8%
7crnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 43.0 2.73e-01 100.0% 54.9%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3726637 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.97 85.0 4.82e-01 93.0% 11.0%
4446417 145.1.1.31 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › PF29466 0.97 90.0 8.53e-01 100.0% 86.0%
4017103 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.96 84.0 4.77e-01 93.0% 11.1%
3687689 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.95 87.0 5.02e-01 100.0% 12.6%
3202320 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.95 84.0 4.69e-01 100.0% 9.8%
None — 0.94 81.0 4.48e-01 93.0% 8.1%
3341479 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 86.0 7.14e-01 97.7% 60.0%
3171073 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 86.0 6.10e-01 100.0% 37.4%
3349711 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.94 81.0 8.00e-01 93.0% 88.9%
3189161 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.93 82.0 4.61e-01 97.7% 9.6%
3219180 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.93 81.0 8.37e-01 97.7% 100.0%
3189379 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.93 84.0 7.25e-01 100.0% 66.2%
3731257 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 78.0 8.07e-01 93.0% 100.0%
3635440 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.92 83.0 7.93e-01 100.0% 86.0%
3843694 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.91 76.0 4.87e-01 90.7% 21.8%
3425357 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.91 84.0 6.73e-01 100.0% 55.1%
3724474 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.91 82.0 4.57e-01 100.0% 9.0%
None — 0.91 81.0 4.49e-01 100.0% 8.5%
3672250 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.91 78.0 4.96e-01 95.3% 21.6%
3939710 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.90 81.0 7.03e-01 100.0% 66.2%
3442643 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.90 82.0 4.48e-01 100.0% 7.5%
4160836 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.90 81.0 4.76e-01 100.0% 14.1%
3173927 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 81.0 8.02e-01 100.0% 95.6%
3399970 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.90 80.0 4.89e-01 100.0% 17.9%
3239444 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.90 74.0 7.69e-01 90.7% 97.5%
3664817 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.90 76.0 6.01e-01 90.7% 48.8%
3569619 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.90 77.0 7.58e-01 93.0% 91.1%
3501462 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.89 71.0 7.40e-01 86.0% 92.5%
3217628 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 74.0 7.59e-01 93.0% 100.0%
3680688 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.89 76.0 4.28e-01 100.0% 9.6%
3935864 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.89 80.0 4.43e-01 100.0% 14.2%
None — 0.89 79.0 4.33e-01 100.0% 7.4%
3837286 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.89 79.0 6.16e-01 100.0% 50.0%
3515309 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.89 80.0 4.56e-01 100.0% 18.2%
3300009 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 80.0 6.40e-01 100.0% 55.0%
3491937 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 77.0 5.99e-01 97.7% 50.0%
3726840 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 79.0 6.50e-01 100.0% 92.0%
3902311 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 79.0 6.22e-01 100.0% 54.1%
3259075 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 79.0 6.38e-01 100.0% 56.4%
3224057 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.88 73.0 7.50e-01 100.0% 100.0%
3991892 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.87 78.0 4.32e-01 100.0% 14.7%
3730054 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 78.0 6.52e-01 97.7% 64.3%
3407033 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 76.0 6.29e-01 97.7% 60.0%
3422328 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 76.0 6.01e-01 97.7% 90.6%
3675534 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 77.0 6.24e-01 100.0% 87.5%
3489752 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.87 74.0 4.17e-01 95.3% 14.8%
3582067 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 77.0 7.32e-01 100.0% 88.0%
4022140 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.87 77.0 4.30e-01 100.0% 8.3%
3389442 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 77.0 7.65e-01 100.0% 95.6%
3420610 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 77.0 7.06e-01 97.7% 81.8%
3230376 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.86 77.0 4.31e-01 100.0% 15.4%
4000706 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 78.0 7.45e-01 100.0% 86.0%
3643181 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 77.0 6.35e-01 100.0% 88.0%
3639601 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.86 69.0 3.80e-01 88.4% 7.0%
3215203 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.86 71.0 7.32e-01 97.7% 100.0%
3856479 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.86 76.0 4.27e-01 97.7% 17.3%
3547224 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 74.0 5.83e-01 95.3% 51.8%
3820691 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 71.0 7.30e-01 93.0% 100.0%
3613821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 75.0 6.32e-01 97.7% 88.6%
3876177 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 76.0 6.30e-01 100.0% 58.7%
3688419 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 71.0 7.31e-01 95.3% 100.0%
3360537 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 68.0 7.04e-01 88.4% 100.0%
None — 0.85 75.0 4.24e-01 100.0% 16.5%
3323668 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 70.0 5.84e-01 93.0% 92.0%
3358453 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 76.0 6.39e-01 100.0% 65.7%
3184741 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 73.0 5.38e-01 97.7% 40.0%
3461050 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 74.0 7.09e-01 100.0% 86.0%
3524044 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 75.0 7.43e-01 100.0% 95.6%
3628631 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 75.0 6.69e-01 100.0% 71.7%
3270939 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 70.0 7.17e-01 97.7% 100.0%
3811913 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 75.0 7.16e-01 100.0% 88.0%
3417160 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 73.0 5.65e-01 100.0% 45.3%
3415320 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 73.0 6.23e-01 100.0% 62.9%
3781279 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 69.0 5.67e-01 95.3% 87.5%
3380603 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 70.0 6.94e-01 100.0% 93.3%
3194125 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 71.0 5.77e-01 97.7% 57.5%
3824399 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.82 72.0 4.19e-01 100.0% 20.3%
3817535 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.82 71.0 4.17e-01 100.0% 20.0%
3812507 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 68.0 5.31e-01 95.3% 71.0%
3792735 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 69.0 4.00e-01 97.7% 11.3%
3223791 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 71.0 6.40e-01 100.0% 80.0%
3214169 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 72.0 7.10e-01 100.0% 100.0%
4593317 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 71.0 6.35e-01 100.0% 80.0%
3837673 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 67.0 6.68e-01 100.0% 91.1%
3311874 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 67.0 5.66e-01 97.7% 94.7%
3273645 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 67.0 5.53e-01 97.7% 93.8%
3355293 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 70.0 5.30e-01 100.0% 44.0%
3646855 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 70.0 6.92e-01 100.0% 95.6%
3194542 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 68.0 3.83e-01 100.0% 13.7%
4073598 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 70.0 6.12e-01 100.0% 75.4%
3228948 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 63.0 6.49e-01 90.7% 100.0%
4019682 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 67.0 5.24e-01 100.0% 83.2%
3226289 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 63.0 6.47e-01 97.7% 100.0%
3230101 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 65.0 4.32e-01 95.3% 24.1%
3209791 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 64.0 5.68e-01 97.7% 70.8%
3223353 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 62.0 6.39e-01 95.3% 100.0%
4012559 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 63.0 5.19e-01 100.0% 77.6%
3237435 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 58.0 5.99e-01 88.4% 100.0%
3236656 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 63.0 4.43e-01 100.0% 35.0%
3217499 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.70 56.0 5.72e-01 95.3% 100.0%
D2 medium residues 70-154
PDB
Domain cluster: rep: Ankyrin_repeat_domain_containing_protein__YP_009482714__Pandoravirus_quercus__2107709__D78-176
D3 medium residues 155-262
PDB