Back to structures

F-box_incomplete_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

F-box_incomplete_domain_containing_protein__YP_009483133__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483133 ↗
Protein ID:
F-box_incomplete_domain_containing_protein
Kingdom:
euk

Quality

73.5 mean pLDDT

Taxonomy

TaxID: 2107709

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 402-568
PDB
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jxtA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 44.0 4.92e-01 97.0% 95.4%
7fhyB01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.61 49.0 4.10e-01 85.0% 99.3%
5m9dA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 45.0 4.85e-01 98.8% 92.0%
2ouxA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.59 37.0 4.18e-01 99.4% 82.0%
1qqfA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.58 51.0 4.30e-01 94.6% 96.0%
3cf6E03 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.57 42.0 4.65e-01 98.2% 96.9%
4r0zA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 51.0 3.54e-01 99.4% 39.0%
1elkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 45.0 4.74e-01 98.2% 93.5%
2x19B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 51.0 3.18e-01 100.0% 22.0%
1juqC00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 44.0 4.61e-01 98.2% 93.3%
4dvgB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 50.0 4.12e-01 99.4% 59.7%
4e6hA00 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 41.0 2.90e-01 80.2% 26.6%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.54 42.0 4.38e-01 98.2% 88.5%
5bz1A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 48.0 3.74e-01 98.8% 48.0%
3grlA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 49.0 3.32e-01 100.0% 33.8%
7cgfA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 42.0 3.34e-01 99.4% 41.0%
3sl9B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 45.0 4.59e-01 100.0% 91.5%
2w3cA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 48.0 4.11e-01 100.0% 74.7%
4d49A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 47.0 4.19e-01 98.8% 81.9%
3zheB02 1.20.190.60 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 0.51 47.0 4.58e-01 100.0% 97.8%
3ihvA01 1.25.40.890 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 40.0 4.07e-01 88.0% 84.1%
4u2xF00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.51 46.0 4.59e-01 100.0% 94.9%
3ebbA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.50 46.0 3.96e-01 100.0% 69.3%
3bwtA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.50 41.0 3.29e-01 99.4% 43.5%
3o4zA02 1.25.40.720 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tel2 C-terminal domain 0.50 46.0 4.39e-01 99.4% 86.1%
3wozB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.50 45.0 4.11e-01 100.0% 76.4%
3c02A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.50 37.0 3.34e-01 76.6% 91.3%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3714093 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 41.0 5.08e-01 88.0% 97.0%
3734422 109.4.1.2516 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Importin_rep_4, Importin_rep_5, Importin_rep_6, TPR_IPO5 0.67 50.0 3.18e-01 77.2% 37.3%
3638879 109.4.1.1471 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IPO5 0.66 50.0 4.23e-01 79.6% 77.1%
3699772 109.4.1.441 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TFCD_C 0.65 51.0 3.51e-01 82.0% 52.3%
3318788 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 45.0 4.58e-01 100.0% 72.1%
3690288 109.4.1.2628 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_5, Importin_rep_6, TOR1L1_N, TPR_IMB1, TPR_IPO5 0.62 54.0 3.29e-01 94.6% 58.1%
3700534 109.4.1.1310 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRIP12_N 0.61 47.0 3.96e-01 100.0% 48.9%
3328851 109.4.1.22 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.61 51.0 3.65e-01 89.2% 40.2%
3788132 109.4.1.1360 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF, NOC3p 0.61 47.0 3.37e-01 81.4% 68.7%
3846010 207.1.1.104 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_Zer-1 0.60 46.0 3.31e-01 100.0% 28.7%
3741709 261.1.1.1 a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.58 49.0 3.15e-01 92.8% 45.3%
4301546 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 44.0 3.53e-01 95.2% 39.7%
3995349 109.4.1.559 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tuberin 0.57 52.0 4.35e-01 98.2% 62.2%
3677653 109.4.1.935 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TOR1L1_N 0.56 50.0 3.99e-01 100.0% 48.8%
3324184 109.4.1.2 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm 0.55 51.0 3.24e-01 99.4% 25.7%
4003482 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 51.0 3.57e-01 100.0% 38.1%
3233749 109.4.1.1550 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TFCD_C, ARM_TBCD, ARM_TBCD_2nd 0.55 50.0 3.12e-01 98.8% 22.0%
3410491 109.4.1.32 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.55 44.0 3.83e-01 100.0% 55.0%
3401667 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 47.0 3.80e-01 92.2% 68.3%
3573579 109.4.1.1815 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30838 0.55 50.0 3.76e-01 100.0% 59.5%
None 0.54 49.0 3.44e-01 98.8% 41.5%
3498737 109.4.1.112 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1 0.54 49.0 3.54e-01 100.0% 41.6%
3813189 109.4.1.1266 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB 0.54 49.0 2.75e-01 98.8% 9.9%
3710483 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 47.0 3.08e-01 96.4% 39.2%
3446410 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 47.0 3.28e-01 97.0% 52.9%
3591954 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 49.0 4.41e-01 100.0% 81.7%
3560027 109.4.1.1366 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DOCK_C-D_N, PF28208 0.53 48.0 3.08e-01 100.0% 28.4%
3237416 109.4.1.1733 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20, UTP20_C 0.53 48.0 3.12e-01 98.8% 27.5%
3734342 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 48.0 3.17e-01 100.0% 26.3%
3770684 109.4.1.3 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm,Arm_3 0.52 47.0 4.47e-01 99.4% 83.5%
3762523 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 48.0 3.04e-01 100.0% 29.6%
3997205 109.4.1.2 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm 0.51 46.0 4.25e-01 99.4% 84.5%
3540257 109.4.1.300 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ZER1-like_2nd 0.51 47.0 3.34e-01 100.0% 34.9%
1683130 109.4.1.3 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm,Arm_3 0.51 46.0 4.59e-01 100.0% 94.9%
3354144 109.4.1.1413 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28415 0.50 46.0 4.18e-01 100.0% 90.2%
3576253 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 45.0 4.41e-01 98.8% 93.3%
3554027 109.4.1.2 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm 0.50 44.0 4.21e-01 98.8% 82.4%
D2 medium residues 336-401
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.69 53.0 5.42e-01 90.9% 87.3%
3dzaA01 1.20.120.1940 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YfdX protein domain 0.65 57.0 4.70e-01 97.0% 63.2%
2fji101 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.65 53.0 3.82e-01 95.5% 57.9%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.64 51.0 4.48e-01 92.4% 85.2%
2ijeS00 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.64 55.0 3.74e-01 95.5% 28.7%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 53.0 4.55e-01 90.9% 74.8%
4fymF00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 53.0 3.73e-01 100.0% 91.4%
2g47A04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.58 44.0 3.18e-01 87.9% 53.3%
3qnkC00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 49.0 2.98e-01 100.0% 32.7%
2xppA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.56 47.0 3.77e-01 97.0% 82.5%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.55 40.0 4.17e-01 87.9% 91.2%
6sziB01 3.20.20.470 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glucansucrase 0.53 45.0 2.84e-01 95.5% 23.8%
2h7bA01 1.20.120.1110 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain 0.53 43.0 3.91e-01 95.5% 90.6%
3nfqB02 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.53 43.0 3.82e-01 98.5% 90.7%
5jx2A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 43.0 3.21e-01 100.0% 43.4%
1gu2A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.50 37.0 3.16e-01 83.3% 93.5%
3w6sC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 39.0 2.81e-01 89.4% 72.6%
3msuB03 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.50 38.0 3.40e-01 89.4% 81.8%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3269094 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.67 47.0 4.91e-01 92.4% 81.7%
3411883 604.1.1.63 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 0.66 50.0 4.17e-01 83.3% 78.3%
3622196 604.1.1.63 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 0.65 52.0 4.39e-01 90.9% 81.7%
3403503 309.1.1.11 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › PqqF-like_C_4 0.63 49.0 3.45e-01 87.9% 57.0%
3517207 4218.1.1.1 alpha bundles › TAFH domain-like › TAFH domain-like › TAFH domain-like › TAFH 0.63 51.0 4.57e-01 87.9% 91.1%
3544534 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 46.0 4.36e-01 81.8% 91.3%
3493777 309.1.1.11 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › PqqF-like_C_4 0.61 48.0 3.30e-01 87.9% 50.2%
4197449 109.2.1.16 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › LANC_like 0.61 52.0 3.18e-01 95.5% 16.3%
3862747 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.60 45.0 4.23e-01 83.3% 84.7%
3404517 309.1.1.11 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › PqqF-like_C_4 0.60 46.0 3.29e-01 87.9% 54.5%
3928690 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 50.0 2.83e-01 98.5% 12.5%
5510 309.1.1.11 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › PqqF-like_C_4 0.58 45.0 3.22e-01 87.9% 56.1%
3641365 309.1.1.11 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › PqqF-like_C_4 0.58 49.0 3.36e-01 95.5% 57.1%
3489671 309.1.1.0 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.56 45.0 3.25e-01 92.4% 67.4%
3503335 604.1.1.124 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_6 0.56 48.0 4.07e-01 100.0% 87.8%
3744638 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 36.0 3.40e-01 75.8% 53.8%
3257891 611.3.1.1 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.54 45.0 3.61e-01 98.5% 72.4%
3647805 309.1.1.17 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16, Peptidase_M16_C, Peptidase_M16_M, PqqF-like_C_4 0.54 44.0 2.48e-01 95.5% 19.7%
5039516 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.77e-01 100.0% 63.5%
5077789 101.1.2.948 alpha arrays › HTH › HTH › winged helix domain › PF27297 0.54 42.0 3.62e-01 100.0% 52.2%
3775826 4016.1.1.0 alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase 0.54 44.0 3.60e-01 100.0% 91.7%
4028109 3525.1.1.0 alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain 0.53 33.0 3.39e-01 89.4% 61.5%
3415404 3343.1.1.2 alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.53 44.0 2.61e-01 100.0% 11.3%
4947701 101.1.2.882 alpha arrays › HTH › HTH › winged helix domain › FeoA 0.52 39.0 3.47e-01 97.0% 54.0%
3592824 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 36.0 3.50e-01 77.3% 77.5%
3788382 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.52 36.0 3.43e-01 98.5% 61.3%