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F-box_incomplete_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

F-box_incomplete_domain_containing_protein__YP_009483543__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483543 ↗
Protein ID:
F-box_incomplete_domain_containing_protein
Kingdom:
euk

Quality

76.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-43
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009481215__Pandoravirus_macleodensis__2107707__D13-58
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 30.0 4.80e-07 97.3% 68.1%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.87 71.0 4.25e-01 100.0% 13.5%
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.86 71.0 6.69e-01 100.0% 78.3%
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.85 67.0 6.75e-01 91.9% 92.1%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.82 69.0 5.32e-01 100.0% 43.7%
4i6jB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.78 60.0 5.95e-01 100.0% 83.3%
3ogkB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.78 63.0 6.13e-01 91.9% 85.4%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.75 60.0 4.75e-01 100.0% 44.3%
2lyiA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.56 44.0 3.05e-01 97.3% 43.9%
ECOD (97)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3214169 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.95 87.0 8.08e-01 100.0% 82.2%
3360537 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.94 84.0 8.23e-01 100.0% 97.5%
3628631 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.93 84.0 7.08e-01 100.0% 61.7%
3230376 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.93 84.0 4.59e-01 100.0% 7.8%
3380603 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.92 80.0 7.52e-01 100.0% 80.0%
3795292 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.92 80.0 7.82e-01 100.0% 90.0%
3461050 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.92 82.0 7.37e-01 100.0% 74.0%
3665552 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.91 80.0 4.42e-01 100.0% 7.7%
3642624 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.91 81.0 4.92e-01 100.0% 17.6%
3939710 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.90 79.0 6.53e-01 100.0% 56.9%
3529395 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.90 78.0 6.47e-01 100.0% 56.9%
3171073 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 77.0 5.37e-01 100.0% 32.2%
3820691 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.89 72.0 7.07e-01 91.9% 85.0%
3680688 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.88 76.0 4.24e-01 100.0% 8.7%
3569619 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 70.0 6.66e-01 91.9% 75.6%
3341479 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 75.0 6.09e-01 100.0% 52.9%
None — 0.87 74.0 4.08e-01 100.0% 7.5%
3349711 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 71.0 6.72e-01 94.6% 77.8%
3239855 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 73.0 6.89e-01 100.0% 80.0%
3920713 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.86 75.0 4.20e-01 100.0% 9.4%
3238357 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 66.0 6.73e-01 86.5% 94.3%
3837673 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 73.0 6.88e-01 100.0% 80.0%
3699669 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 74.0 7.03e-01 100.0% 84.4%
3470430 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 71.0 7.03e-01 100.0% 90.0%
4000706 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 74.0 6.74e-01 100.0% 74.0%
3613821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 73.0 5.96e-01 100.0% 52.9%
3485475 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 72.0 5.57e-01 100.0% 44.7%
3227830 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 69.0 6.80e-01 100.0% 87.5%
3189379 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.85 71.0 6.02e-01 100.0% 56.9%
3688419 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 67.0 6.67e-01 100.0% 87.5%
3810074 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 72.0 5.66e-01 100.0% 46.8%
3575456 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 73.0 5.47e-01 100.0% 42.2%
4011424 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 71.0 5.41e-01 100.0% 41.1%
3320386 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 72.0 5.41e-01 100.0% 41.1%
3246267 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 66.0 6.49e-01 91.9% 85.0%
3303934 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.84 72.0 6.86e-01 100.0% 82.2%
3792735 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.84 72.0 4.05e-01 100.0% 9.8%
3730054 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 71.0 5.82e-01 100.0% 55.7%
3215203 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 67.0 6.66e-01 100.0% 87.5%
3823768 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 70.0 6.21e-01 97.3% 67.3%
3220332 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 65.0 6.40e-01 89.2% 82.5%
3731257 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 67.0 6.63e-01 94.6% 87.5%
3396134 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 66.0 6.76e-01 94.6% 100.0%
3244362 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 67.0 6.37e-01 100.0% 77.8%
3935864 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.83 70.0 3.86e-01 100.0% 7.2%
3206932 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.83 72.0 4.08e-01 100.0% 17.8%
4446417 145.1.1.31 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › PF29466 0.83 70.0 6.45e-01 100.0% 74.0%
3214753 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.83 63.0 6.47e-01 89.2% 94.3%
3245275 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 69.0 6.82e-01 100.0% 92.5%
3807610 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.82 70.0 4.48e-01 100.0% 21.1%
3671627 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.82 71.0 4.31e-01 100.0% 15.5%
3184741 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 69.0 4.96e-01 100.0% 34.5%
3726840 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 70.0 5.59e-01 100.0% 49.3%
3747527 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 64.0 5.93e-01 97.3% 68.0%
3463234 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 70.0 6.23e-01 100.0% 90.9%
3819291 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 70.0 6.20e-01 100.0% 72.7%
3245517 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 66.0 6.52e-01 91.9% 92.5%
3238761 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 67.0 6.60e-01 100.0% 90.0%
3250931 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.82 68.0 5.53e-01 100.0% 52.0%
3239444 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 63.0 6.21e-01 89.2% 82.5%
3524044 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 68.0 6.52e-01 100.0% 82.2%
3646855 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 66.0 6.33e-01 100.0% 86.7%
3652521 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 68.0 5.52e-01 100.0% 50.7%
3377515 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 69.0 6.54e-01 100.0% 86.7%
3242739 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 69.0 6.33e-01 100.0% 76.0%
3856479 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.81 65.0 3.67e-01 100.0% 8.4%
3407033 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 66.0 5.39e-01 100.0% 50.7%
3237331 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 66.0 6.04e-01 94.6% 70.0%
2899589 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 67.0 5.44e-01 100.0% 51.4%
3239562 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 67.0 6.00e-01 100.0% 69.1%
3217628 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.79 61.0 6.05e-01 94.6% 87.5%
3568315 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.79 67.0 4.01e-01 100.0% 14.9%
3212367 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 62.0 6.14e-01 100.0% 87.5%
3852694 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 66.0 4.00e-01 100.0% 15.8%
4028410 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 67.0 5.92e-01 100.0% 72.7%
3420574 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 62.0 6.04e-01 100.0% 84.4%
3228948 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 59.0 5.92e-01 94.6% 87.5%
3691218 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 64.0 5.75e-01 100.0% 69.1%
3243910 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 59.0 5.50e-01 91.9% 68.0%
3466008 207.1.1.96 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1 0.77 60.0 3.42e-01 100.0% 8.5%
3223353 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 64.0 6.30e-01 100.0% 90.0%
3664817 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 62.0 5.02e-01 100.0% 46.3%
3507975 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 60.0 3.58e-01 100.0% 13.2%
3223791 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 61.0 5.41e-01 100.0% 66.7%
3212138 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 64.0 5.18e-01 100.0% 49.3%
3194725 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 60.0 4.82e-01 100.0% 44.7%
4593317 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 60.0 5.37e-01 100.0% 65.0%
3244551 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 57.0 5.68e-01 100.0% 87.5%
3639601 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.75 61.0 3.39e-01 100.0% 13.9%
3527636 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 61.0 4.78e-01 100.0% 42.7%
3237435 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.74 57.0 5.69e-01 91.9% 95.0%
3229045 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 60.0 4.61e-01 100.0% 38.9%
3223932 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.73 57.0 5.71e-01 100.0% 90.0%
3236632 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.72 56.0 5.48e-01 91.9% 95.0%
3245585 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.70 57.0 5.64e-01 100.0% 92.5%
3218165 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.70 61.0 6.03e-01 100.0% 97.5%
3216313 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.69 60.0 5.88e-01 100.0% 95.0%
D2 medium residues 157-231_269-330
PDB
Domain cluster: rep: F-box_incomplete_domain_containing_protein__YP_009481175__Pandoravirus_macleodensis__2107707__D178-252_292-348