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F-box_incomplete_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

F-box_incomplete_domain_containing_protein__YP_009483677__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483677 ↗
Protein ID:
F-box_incomplete_domain_containing_protein
Kingdom:
euk

Quality

61.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 76-177
PDB
D2 medium residues 178-240
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wdyA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.67 55.0 3.65e-01 95.2% 24.6%
4gytA00 1.20.120.740 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695 0.66 48.0 3.52e-01 77.8% 91.0%
3pubA01 1.10.10.2400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain 0.64 51.0 4.89e-01 88.9% 100.0%
3ljnA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.64 53.0 3.47e-01 96.8% 33.9%
5z2mB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.63 53.0 4.24e-01 98.4% 78.8%
4n5qA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.60 51.0 3.51e-01 100.0% 52.2%
4g26A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 49.0 3.25e-01 100.0% 66.0%
1k92A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 42.0 3.12e-01 88.9% 30.6%
1ku1A01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.57 46.0 4.44e-01 95.2% 100.0%
3k1rA01 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.54 46.0 4.30e-01 100.0% 79.0%
2p58C00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 45.0 3.87e-01 98.4% 61.6%
1xm8A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 44.0 3.02e-01 96.8% 35.4%
4y6cA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 44.0 3.15e-01 100.0% 43.4%
1kewA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.51 38.0 3.52e-01 82.5% 60.7%
1htjF00 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.51 41.0 3.18e-01 100.0% 99.5%
3cl3A02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.50 34.0 3.19e-01 73.0% 72.7%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3665502 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.69 57.0 4.95e-01 96.8% 96.2%
4026730 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.68 58.0 4.85e-01 100.0% 86.1%
3620555 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.67 56.0 3.96e-01 95.2% 53.0%
3813895 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.66 56.0 3.55e-01 96.8% 23.3%
4366670 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.66 50.0 4.17e-01 85.7% 76.7%
3678251 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.65 55.0 4.66e-01 100.0% 87.0%
3256565 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.64 54.0 4.06e-01 98.4% 56.5%
3424689 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.64 54.0 4.05e-01 98.4% 77.1%
3272984 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 54.0 3.25e-01 100.0% 15.3%
3884335 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.63 53.0 4.49e-01 96.8% 70.9%
4289299 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.63 51.0 3.55e-01 93.7% 43.4%
3372026 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.63 50.0 4.28e-01 92.1% 87.3%
4611981 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.63 52.0 4.23e-01 96.8% 75.4%
3879610 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.62 53.0 4.37e-01 96.8% 58.3%
3676815 109.3.1.10 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_4 0.62 52.0 4.70e-01 96.8% 73.3%
3360250 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.62 52.0 4.11e-01 96.8% 50.7%
3525086 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.62 50.0 3.30e-01 93.7% 34.2%
3351591 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.62 50.0 4.39e-01 96.8% 92.4%
3469440 109.4.1.1424 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3, TPR_24 0.61 51.0 3.70e-01 100.0% 51.2%
3244143 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.61 52.0 4.16e-01 100.0% 77.8%
3560377 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.60 49.0 4.05e-01 95.2% 72.8%
3730853 5.1.4.223 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd 0.59 50.0 2.80e-01 100.0% 12.9%
4093240 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.59 47.0 5.02e-01 90.5% 100.0%
3381254 109.4.1.2593 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long, Eplus_motif 0.59 49.0 3.24e-01 96.8% 43.1%
3828594 109.4.1.1365 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, TPR_24 0.59 50.0 4.31e-01 98.4% 98.1%
3826428 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.59 50.0 4.03e-01 100.0% 53.3%
3735635 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.55 43.0 3.99e-01 85.7% 88.7%
141813 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.55 44.0 3.10e-01 93.7% 41.0%
3668213 109.59.1.13 ↗ alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › E_motif 0.55 44.0 4.38e-01 93.7% 100.0%
3619816 2004.1.1.33 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C,RecQ_Zn_bind 0.54 45.0 3.07e-01 100.0% 81.5%
D3 medium residues 241-416
PDB
Domain cluster: rep: F-box_incomplete_domain_containing_protein__YP_008319396__Pandoravirus_dulcis__1349409__D288-356_368-424
D4 medium residues 417-513
PDB
D5 medium residues 514-652
PDB