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F-box_incomplete_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

F-box_incomplete_domain_containing_protein__YP_009483791__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483791 ↗
Protein ID:
F-box_incomplete_domain_containing_protein
Kingdom:
euk

Quality

73.7 mean pLDDT

Taxonomy

TaxID: 2107709

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 194-294
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x5bA01 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.70 62.0 5.70e-01 100.0% 98.5%
5cecB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.69 64.0 5.07e-01 100.0% 66.8%
1qymA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.68 60.0 4.61e-01 97.0% 57.4%
1ympA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.66 60.0 5.53e-01 100.0% 82.4%
1hx8A01 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 54.0 5.20e-01 91.1% 100.0%
3uxgA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.65 59.0 4.99e-01 100.0% 61.3%
5mdtA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 55.0 4.90e-01 98.0% 93.4%
6t0bf00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.59 50.0 5.00e-01 95.0% 94.1%
1ug3A02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 52.0 4.82e-01 100.0% 100.0%
2gmyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.58 35.0 3.14e-01 94.1% 40.7%
3nivC02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 43.0 4.06e-01 79.2% 91.1%
2xpzA04 1.25.40.320 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal domain 0.57 50.0 4.33e-01 100.0% 94.5%
5z62E00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.57 48.0 4.72e-01 95.0% 90.8%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 43.0 3.81e-01 86.1% 91.6%
1sqmA04 1.25.40.320 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal domain 0.55 47.0 4.25e-01 100.0% 70.5%
5jj6B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 42.0 4.32e-01 95.0% 89.6%
7vepA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 45.0 3.40e-01 100.0% 36.7%
4nq0A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 44.0 3.41e-01 99.0% 91.3%
7yb9A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 43.0 3.49e-01 100.0% 48.6%
3htaC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 43.0 3.63e-01 100.0% 88.9%
7nazA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 43.0 3.25e-01 100.0% 36.4%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3273950 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.71 64.0 5.74e-01 100.0% 71.4%
3250144 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.71 64.0 4.76e-01 100.0% 62.0%
3381999 109.3.1.8 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.70 64.0 5.32e-01 100.0% 77.7%
3254402 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.70 64.0 5.81e-01 100.0% 81.5%
3359828 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.70 64.0 5.28e-01 100.0% 61.7%
3296677 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.68 59.0 5.69e-01 96.0% 87.0%
3250343 109.3.1.189 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF28996 0.67 60.0 4.60e-01 100.0% 43.5%
3814765 109.4.1.1336 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3 0.64 58.0 5.21e-01 100.0% 97.1%
3383403 109.4.1.1257 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.63 56.0 4.56e-01 100.0% 80.0%
3272965 109.3.1.8 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.63 55.0 5.51e-01 96.0% 100.0%
3518240 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 54.0 3.89e-01 100.0% 65.6%
3432133 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 51.0 5.13e-01 100.0% 93.0%
3657285 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.60 53.0 4.07e-01 100.0% 56.2%
3329843 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.60 53.0 3.98e-01 100.0% 48.1%
3826675 109.4.1.583 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi 0.60 52.0 4.10e-01 100.0% 75.7%
3718270 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 53.0 3.57e-01 100.0% 37.2%
3263419 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 53.0 3.67e-01 100.0% 53.0%
3467992 109.4.1.1277 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 0.59 52.0 4.35e-01 100.0% 71.1%
3326709 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.59 53.0 4.19e-01 100.0% 60.5%
3316394 109.4.1.1292 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3 0.58 51.0 4.36e-01 100.0% 58.8%
3361507 109.4.1.2310 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_3, E_motif 0.58 51.0 4.44e-01 100.0% 63.9%
3348685 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.58 50.0 4.17e-01 100.0% 53.5%
3408282 109.7.1.1 alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › COX5A 0.58 49.0 4.74e-01 96.0% 86.0%
3678433 109.4.1.1258 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.58 50.0 5.06e-01 100.0% 99.0%
3344041 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.57 50.0 4.28e-01 100.0% 74.1%
3344688 109.4.1.1273 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.57 50.0 4.17e-01 100.0% 72.7%
3439873 109.4.1.189 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.56 50.0 4.96e-01 100.0% 96.2%
None 0.56 47.0 3.09e-01 93.1% 80.4%
3672361 109.4.1.1365 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, TPR_24 0.56 50.0 4.95e-01 100.0% 96.2%
3806322 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.55 48.0 4.63e-01 100.0% 87.0%
3692854 109.4.1.1356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, PPR_3, PPR_long 0.55 48.0 4.32e-01 100.0% 71.7%
3645010 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 46.0 4.45e-01 97.0% 91.3%
3336165 3546.1.1.0 alpha arrays › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain › Peroxisomal biogenesis factor 14 N-terminal domain 0.53 42.0 3.87e-01 95.0% 66.2%
3885902 3736.1.1.1 alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4_HD2 0.52 43.0 3.95e-01 95.0% 96.4%
4968104 1188.1.1.1 alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip 0.51 37.0 2.90e-01 76.2% 82.6%
D2 medium residues 295-351
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rlyA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.78 65.0 4.05e-01 93.0% 18.5%
3lvqE02 1.25.40.950 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.71 56.0 5.16e-01 87.7% 86.5%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 53.0 4.43e-01 98.2% 86.7%
4m9aA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.65 52.0 4.23e-01 94.7% 75.6%
5lnxF01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.63 51.0 4.22e-01 96.5% 98.3%
1wy6A00 1.25.40.350 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 57.0 4.06e-01 98.2% 35.8%
2jifA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.63 49.0 4.07e-01 93.0% 75.4%
4jgiA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.62 48.0 4.37e-01 87.7% 96.2%
3nf4A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.61 49.0 4.05e-01 96.5% 75.6%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 45.0 4.10e-01 80.7% 100.0%
1bucA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.60 48.0 3.93e-01 96.5% 74.0%
1vjxA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 44.0 3.38e-01 96.5% 91.3%
2f8lA01 1.10.150.470 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.54 37.0 3.30e-01 80.7% 50.6%
1b10A00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.53 37.0 3.15e-01 75.4% 62.5%
3rh9A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 40.0 2.65e-01 89.5% 17.6%
3milB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 41.0 2.87e-01 98.2% 61.3%
1euhA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 44.0 2.87e-01 100.0% 47.8%
5vbfA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 43.0 2.77e-01 98.2% 42.0%
1ks9A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 35.0 2.91e-01 77.2% 72.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3274261 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.80 71.0 5.07e-01 100.0% 64.2%
3731958 109.3.1.166 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.75 66.0 4.09e-01 100.0% 28.4%
4441096 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.68 52.0 5.13e-01 82.5% 85.0%
3373809 109.4.1.1269 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.65 55.0 4.08e-01 98.2% 41.3%
3000521 109.1.1.1 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.61 52.0 4.09e-01 98.2% 76.8%
3654164 109.4.1.1156 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.60 52.0 3.90e-01 100.0% 60.0%
3651438 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 45.0 3.63e-01 82.5% 93.6%
3682039 604.1.1.188 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Mito_carr 0.57 43.0 3.49e-01 82.5% 93.6%
4968619 2008.1.1.44 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › FokI_cleav_dom 0.57 47.0 3.38e-01 96.5% 51.4%
3810942 4030.1.1.10 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › PPR 0.56 46.0 4.42e-01 91.2% 83.1%
None 0.53 45.0 3.15e-01 100.0% 32.4%
D4 medium residues 441-566
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vdyA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 46.0 4.51e-01 72.2% 92.9%
3k62A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 59.0 4.17e-01 100.0% 42.8%
7cgfA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 55.0 4.07e-01 100.0% 42.5%
7zcvA02 1.25.40.400 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 47.0 4.05e-01 88.9% 81.9%
2lo6A00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 49.0 4.59e-01 92.9% 95.5%
2feaA02 3.90.1470.20 Alpha Beta › Alpha-Beta Complex › thrh gene product, domain 2 › 0.55 32.0 3.56e-01 91.3% 71.4%
5jj6B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 35.0 3.89e-01 95.2% 94.8%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3195802 109.3.1.186 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_5 0.65 60.0 4.69e-01 100.0% 59.2%
4433504 109.4.1.1265 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF, PUF_NOP9 0.64 57.0 3.68e-01 100.0% 30.5%
3872404 109.4.1.1984 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Maestro, HEAT_Maestro_2, HEAT_MROH2B_C 0.64 57.0 3.41e-01 100.0% 25.2%
3275581 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.61 49.0 4.73e-01 95.2% 75.2%
5056228 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.59 51.0 3.88e-01 96.8% 43.7%
4417176 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 50.0 4.39e-01 98.4% 71.3%
3638030 109.4.1.186 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC3 0.56 46.0 3.86e-01 89.7% 72.7%
1320399 109.4.1.162 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 0.54 48.0 3.19e-01 100.0% 67.9%
3425704 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.52 46.0 4.00e-01 100.0% 94.5%
3598666 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 44.0 3.85e-01 94.4% 95.0%