←Back to structures
F-protein
Euk-VirChoristoneura_rosaceana_nucleopolyhedrovirus
F-protein__YP_008378484__Choristoneura_rosaceana_nucleopolyhedrovirus__58094
Identity
- Accession:
- YP_008378484 ↗
- Protein ID:
- F-protein
- Kingdom:
- euk
Quality
70.6
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Choristoneura_rosaceana_nucleopolyhedrovirus
TaxID: 58094
Cluster
View cluster (44 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 31-44_342-356_387-448_515-531
D2
medium
residues 45-56_152-179_249-306
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r62A00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.64 | 32.0 | 2.85e-01 | 100.0% | 35.3% |
| 6iomB01 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.59 | 29.0 | 3.22e-01 | 98.0% | 58.4% |
| 2k3iA01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 34.0 | 3.64e-01 | 100.0% | 67.1% |
| 4wxaA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.55 | 29.0 | 3.21e-01 | 100.0% | 63.1% |
| 3f62A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 34.0 | 3.37e-01 | 100.0% | 58.3% |
| 6u6pA01 | 3.30.1070.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › Cell division topological specificity factor MinE | 0.52 | 33.0 | 3.69e-01 | 100.0% | 80.8% |
| 2ednA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 30.0 | 2.85e-01 | 100.0% | 46.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3936485 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.64 | 35.0 | 3.48e-01 | 100.0% | 53.0% |
| 4182228 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.62 | 38.0 | 4.01e-01 | 100.0% | 68.2% |
| 5057074 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.62 | 41.0 | 4.09e-01 | 100.0% | 66.0% |
| 3895929 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.61 | 31.0 | 3.16e-01 | 100.0% | 48.0% |
| 3630471 | 3008.1.1.2 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DUF5915 | 0.61 | 40.0 | 4.03e-01 | 100.0% | 66.0% |
| 4101071 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.60 | 39.0 | 4.26e-01 | 100.0% | 81.2% |
| 4175824 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.59 | 34.0 | 4.15e-01 | 100.0% | 87.7% |
| 3508836 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 35.0 | 3.29e-01 | 100.0% | 48.0% |
| 5062584 | 3008.1.1.2 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DUF5915 | 0.57 | 34.0 | 3.70e-01 | 100.0% | 69.4% |
| 4182510 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.57 | 36.0 | 3.78e-01 | 100.0% | 68.9% |
| 1513105 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.54 | 29.0 | 3.22e-01 | 100.0% | 64.6% |
| 3495694 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.52 | 28.0 | 2.99e-01 | 98.0% | 60.0% |
| 4927268 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.52 | 29.0 | 3.19e-01 | 100.0% | 67.5% |
| 4048714 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.52 | 32.0 | 3.42e-01 | 100.0% | 71.8% |
| 3627282 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.51 | 37.0 | 3.75e-01 | 100.0% | 74.0% |
| 3488497 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.50 | 32.0 | 2.76e-01 | 100.0% | 41.3% |
D3
medium
residues 57-113_180-248