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F-protein

Euk-Vir

Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus

F-protein__YP_009316158__Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus__268591

Identity

Accession:
YP_009316158 ↗
Protein ID:
F-protein
Kingdom:
euk

Quality

74.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Anticarsia_gemmatalis_multiple_nucleopolyhedrovirus

TaxID: 268591

Cluster

View cluster (44 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-40_390-560
PDB
Domain cluster: rep: efp__YP_004376238__Clostera_anachoreta_granulovirus__283675__D22-47_387-525
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12259.14 best Baculo_F 44.4 1.30e-11 87.7% 23.8%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zyrA02 2.60.40.2190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 26.0 3.52e-01 79.5% 93.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4354768 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.63 24.0 4.02e-01 79.5% 97.1%
5068882 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 25.0 3.89e-01 79.5% 96.2%
3999787 11.1.4.98 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Ig_NOMO 0.58 24.0 3.73e-01 79.5% 93.8%
3407194 5093.1.1.2 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Baculo_F 0.58 48.0 3.70e-01 85.1% 99.5%
4934792 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.58 25.0 3.89e-01 79.5% 98.8%
5060809 11.1.4.106 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA 0.58 25.0 3.77e-01 79.5% 92.9%
5060810 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.57 26.0 3.80e-01 79.5% 95.3%
4982441 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 26.0 3.81e-01 79.5% 97.6%
4954553 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 25.0 3.60e-01 79.5% 90.9%
3317825 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.53 23.0 3.54e-01 79.5% 97.5%
4297158 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.53 24.0 3.49e-01 79.0% 95.3%
4981615 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 24.0 3.46e-01 79.5% 95.3%
D2 medium residues 41-54_146-181_239-312
PDB
Domain cluster: rep: F-protein__YP_008378484__Choristoneura_rosaceana_nucleopolyhedrovirus__58094__D45-56_152-179_249-306
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12259.14 best Baculo_F 26.5 3.50e-06 76.6% 13.3%
D3 medium residues 55-114_182-238
PDB
Domain cluster: rep: F_protein__YP_009666631__Oxyplax_ochracea_nucleopolyhedrovirus__2083176__D54-113_182-238
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.75 40.0 4.48e-01 99.1% 66.7%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.68 39.0 4.05e-01 98.3% 59.5%
5jj6B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 27.0 2.95e-01 86.3% 42.7%
4hyjA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.65 50.0 3.95e-01 80.3% 99.2%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.65 56.0 5.81e-01 96.6% 100.0%
1hciA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 39.0 3.80e-01 99.1% 54.8%
2wdqD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.64 37.0 3.95e-01 100.0% 64.8%
3ezuA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 55.0 4.74e-01 95.7% 65.4%
2xq9A02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.63 41.0 4.05e-01 100.0% 63.6%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.62 39.0 3.96e-01 98.3% 64.0%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 34.0 3.55e-01 100.0% 55.4%
5b2nA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 47.0 3.65e-01 82.9% 93.2%
4jioA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.59 48.0 4.29e-01 84.6% 88.8%
2vxxA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 50.0 4.46e-01 95.7% 65.7%
4iu9B01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.58 49.0 4.05e-01 94.9% 88.8%
1fntc01 1.20.120.180 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain 0.57 45.0 3.81e-01 82.9% 68.6%
7ckaA01 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.56 47.0 3.98e-01 93.2% 55.0%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.55 50.0 4.27e-01 100.0% 87.4%
4btfA01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.54 42.0 4.42e-01 92.3% 97.0%
3um7A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 40.0 4.20e-01 99.1% 87.4%
3rvyA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 36.0 3.81e-01 100.0% 75.7%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.53 28.0 3.01e-01 93.2% 57.7%
1avoB00 1.20.120.180 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain 0.53 40.0 3.84e-01 80.3% 95.7%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 39.0 4.06e-01 98.3% 83.0%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 47.0 4.47e-01 97.4% 94.0%
2wbiA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.52 29.0 2.93e-01 90.6% 52.5%
4akgA11 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.52 45.0 3.54e-01 100.0% 73.2%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 40.0 4.37e-01 81.2% 97.9%
1y4cA03 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.51 42.0 4.33e-01 89.7% 91.2%
6nmnA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 43.0 4.15e-01 89.7% 88.3%
3bvxA02 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.50 41.0 4.23e-01 86.3% 92.8%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.50 44.0 4.26e-01 94.9% 92.2%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3894479 5057.1.1.13 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Strabismus 0.68 60.0 5.77e-01 95.7% 94.8%
3530312 2485.1.1.120 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Strabismus 0.66 55.0 5.33e-01 89.7% 98.5%
4028685 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.65 44.0 4.56e-01 100.0% 72.7%
3609096 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.64 50.0 3.92e-01 82.1% 52.3%
5026844 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.63 36.0 3.51e-01 97.4% 51.5%
3758701 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.63 42.0 4.67e-01 100.0% 85.3%
3906003 4177.2.1.1 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › Inhibitor of kappaB kinase beta dimerization domain › Inhibitor of kappaB kinase beta dimerization domain › TBK1_CCD1 0.62 47.0 3.54e-01 80.3% 78.2%
3691893 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.62 55.0 4.51e-01 98.3% 84.7%
3693465 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.61 39.0 3.95e-01 98.3% 63.3%
3816224 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.61 27.0 3.45e-01 82.9% 70.0%
3730940 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.58 50.0 4.64e-01 97.4% 91.6%
5064406 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.57 50.0 4.95e-01 98.3% 90.0%
3601722 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.57 48.0 3.34e-01 92.3% 60.0%
4671784 3755.3.1.310 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CemA 0.57 40.0 3.98e-01 71.8% 69.2%
4195555 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.56 39.0 3.36e-01 94.9% 46.1%
3685511 611.8.1.0 ↗ alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 0.56 50.0 4.31e-01 99.1% 85.4%
3544039 11.2.1.19 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF3657 0.56 44.0 3.12e-01 82.1% 29.0%
3369451 192.2.1.35 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Hobbit 0.56 40.0 4.02e-01 100.0% 72.5%
3962097 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.56 50.0 4.46e-01 97.4% 70.6%
4979715 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.55 40.0 3.70e-01 75.2% 97.3%
4977534 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 39.0 3.75e-01 100.0% 65.2%
3724351 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.54 40.0 3.96e-01 77.8% 88.0%
4616546 6155.1.1.4 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.54 38.0 4.04e-01 86.3% 81.9%
3490874 5068.1.1.1 ↗ alpha bundles › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Cytochrom_B_C 0.54 42.0 4.43e-01 95.7% 93.3%
4953007 632.11.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF357 0.54 34.0 4.17e-01 71.8% 100.0%
4026128 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.53 46.0 4.24e-01 94.0% 100.0%
3325109 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.53 46.0 3.79e-01 95.7% 90.5%
1788534 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.53 39.0 3.94e-01 99.1% 75.9%
5054165 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 3.70e-01 94.9% 50.0%
4593075 5059.1.1.9 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Sugar_transport 0.52 45.0 3.45e-01 95.7% 64.2%
4503487 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.52 43.0 3.25e-01 90.6% 76.6%
3287135 6164.1.1.2 ↗ alpha bundles › Bestrophin › Bestrophin › Bestrophin › DUF4239 0.51 45.0 3.51e-01 99.1% 45.2%
5055517 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.51 37.0 3.48e-01 88.9% 62.9%
3517291 192.29.1.24 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TMEM237 0.51 43.0 3.68e-01 90.6% 94.4%
D4 medium residues 313-389
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12259.14 best Baculo_F 45.7 5.40e-12 100.0% 12.2%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 33.0 3.50e-01 70.1% 70.0%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.51 34.0 3.53e-01 81.8% 75.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3407194 5093.1.1.2 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Baculo_F 0.84 77.0 4.74e-01 100.0% 19.2%
3557904 101.1.2.580 ↗ alpha arrays › HTH › HTH › winged helix domain › DEPDC5_CTD 0.67 38.0 3.45e-01 89.6% 41.3%
3336992 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 35.0 3.16e-01 70.1% 92.2%