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F-protein

Euk-Vir

Cryptophlebia_peltastica_nucleopolyhedrovirus

F-protein__YP_010086992__Cryptophlebia_peltastica_nucleopolyhedrovirus__2304025

Identity

Accession:
YP_010086992 ↗
Protein ID:
F-protein
Kingdom:
euk

Quality

71.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Cryptophlebia_peltastica_nucleopolyhedrovirus

TaxID: 2304025

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-141_156-250
PDB
Domain cluster: rep: F_protein__YP_009165735__Perigonia_lusca_single_nucleopolyhedrovirus__1675865__D49-139_173-272
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12259.14 best Baculo_F 159.5 1.90e-46 100.0% 33.3%
D2 medium residues 26-37_417-493
PDB
Domain cluster: rep: fusion_protein__YP_009117053__Pseudoplusia_includens_SNPV_IE__1592335__D24-36_422-482
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12259.14 best Baculo_F 70.5 1.60e-19 93.3% 11.8%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4exkA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 49.0 4.62e-01 70.8% 92.3%
3t91B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.69 50.0 3.75e-01 76.4% 67.1%
2e9wA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 45.0 4.61e-01 71.9% 94.0%
1svbA04 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 44.0 4.32e-01 70.8% 88.5%
1b4rA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 44.0 4.57e-01 70.8% 100.0%
2hjiA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 44.0 3.69e-01 75.3% 75.0%
3besR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 44.0 4.50e-01 76.4% 100.0%
5g47A01 2.60.40.3770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 41.0 4.26e-01 70.8% 100.0%
3qt2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 4.06e-01 71.9% 93.8%
3bpnC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 41.0 4.13e-01 74.2% 96.8%
1tg7A02 2.102.20.10 Mainly Beta › 3-layer Sandwich › beta-galactosidase, domain 2 › Beta-galactosidase, domain 2 0.59 44.0 3.53e-01 79.8% 62.4%
1ibyA00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.58 44.0 4.10e-01 80.9% 98.2%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 44.0 3.90e-01 83.1% 92.0%
1w9yA00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.58 46.0 3.25e-01 87.6% 79.2%
2g19A00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.58 47.0 3.57e-01 88.8% 89.8%
1fwxA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.58 42.0 3.84e-01 77.5% 99.2%
5tk2B00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.58 43.0 4.34e-01 79.8% 97.7%
3itqA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.58 46.0 3.70e-01 88.8% 91.9%
1anuA00 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 39.0 3.44e-01 70.8% 100.0%
2ya1A03 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 36.0 4.08e-01 77.5% 87.7%
3rnsA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 40.0 3.78e-01 74.2% 88.9%
2ciqA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 40.0 2.83e-01 74.2% 33.8%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.56 39.0 3.31e-01 74.2% 84.6%
8h68A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.56 45.0 3.43e-01 88.8% 82.7%
1yllA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 45.0 4.49e-01 88.8% 100.0%
2wfpA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 40.0 3.89e-01 76.4% 91.8%
5j7mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 40.0 3.63e-01 77.5% 81.1%
1gqgC01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 40.0 3.51e-01 79.8% 93.6%
4mloA01 2.60.120.810 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.45e-01 84.3% 84.9%
2qnkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 42.0 2.99e-01 88.8% 92.7%
4yarA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 42.0 3.81e-01 89.9% 100.0%
3cewA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 39.0 3.72e-01 84.3% 90.9%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 35.0 3.24e-01 71.9% 78.3%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3407194 5093.1.1.2 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Baculo_F 0.77 65.0 4.18e-01 91.0% 39.7%
4954979 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.74 51.0 5.48e-01 70.8% 100.0%
4989272 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.71 49.0 4.29e-01 71.9% 97.8%
4596980 5093.1.1.0 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein 0.70 50.0 3.46e-01 75.3% 100.0%
4954467 11.1.1.237 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 0.68 47.0 4.87e-01 71.9% 97.6%
4953822 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 48.0 4.71e-01 73.0% 97.9%
5041036 11.1.1.1409 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4129 0.67 50.0 4.06e-01 79.8% 89.3%
5036516 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 45.0 4.58e-01 70.8% 86.7%
3986598 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 45.0 4.40e-01 70.8% 96.0%
4940583 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 47.0 4.34e-01 75.3% 79.1%
4969170 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 45.0 4.69e-01 71.9% 98.8%
5070794 11.1.1.124 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glucodextran_B 0.64 45.0 4.76e-01 74.2% 100.0%
4948928 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 45.0 4.52e-01 74.2% 100.0%
4012916 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.64 44.0 4.14e-01 71.9% 67.3%
4223061 11.31.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Beta-galactosidase LacA beta-sandwich domain › Beta-galactosidase LacA beta-sandwich domain › BetaGal_dom2 0.63 43.0 4.35e-01 70.8% 96.7%
4354768 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.63 43.0 4.74e-01 89.9% 90.0%
3344193 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.62 46.0 3.30e-01 78.7% 86.7%
4941739 3156.1.1.13 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 0.62 48.0 4.76e-01 83.1% 91.6%
3328074 10.12.1.73 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DIOX_N 0.62 49.0 3.53e-01 87.6% 77.2%
5030321 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 44.0 4.07e-01 74.2% 92.2%
3329803 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.62 49.0 3.40e-01 87.6% 67.1%
5071010 11.1.1.124 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glucodextran_B 0.62 43.0 4.41e-01 73.0% 96.5%
1411392 10.12.1.44 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ofd1_CTDD 0.60 48.0 3.37e-01 87.6% 81.6%
5061283 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.60 45.0 4.72e-01 89.9% 87.5%
297101 11.1.1.43 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Flavi_glycop_C 0.60 43.0 4.20e-01 76.4% 100.0%
5008636 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 4.26e-01 70.8% 96.2%
4961030 3156.1.1.3 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Copper-bind 0.59 44.0 4.62e-01 78.7% 96.2%
4952569 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 41.0 4.24e-01 71.9% 97.6%
5003938 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.59 44.0 4.65e-01 78.7% 100.0%
3646479 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.59 40.0 3.77e-01 70.8% 57.5%
4547628 210.2.1.2 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › SpoIIE 0.59 42.0 3.26e-01 76.4% 68.0%
3740512 2002.1.1.198 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_71 0.59 44.0 4.05e-01 80.9% 94.1%
5022117 3156.1.1.3 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Copper-bind 0.59 44.0 4.50e-01 80.9% 90.9%
4255748 5040.1.1.0 ↗ extended segments › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region 0.58 45.0 3.81e-01 85.4% 80.4%
1758408 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 40.0 3.98e-01 73.0% 89.5%
3422634 10.12.1.73 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DIOX_N 0.57 46.0 3.32e-01 88.8% 94.9%
3345378 10.12.1.17 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N 0.57 45.0 3.15e-01 87.6% 76.5%
4959594 3156.1.1.13 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 0.57 41.0 4.44e-01 77.5% 100.0%
4974359 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 42.0 3.69e-01 82.0% 84.1%
4087725 10.12.1.85 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 0.55 43.0 3.40e-01 83.1% 83.8%
5006284 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 37.0 3.98e-01 71.9% 96.0%
3647398 10.12.1.17 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N 0.54 43.0 3.02e-01 88.8% 74.5%
4952811 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 2.90e-01 79.8% 65.5%
2565054 10.12.1.65 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ToxT_N 0.53 42.0 3.43e-01 84.3% 82.4%
3677913 10.12.1.144 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C, PMI_typeI_cat 0.53 36.0 2.66e-01 70.8% 90.0%
3288347 10.12.1.85 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 0.52 40.0 3.30e-01 83.1% 76.9%
3404684 10.12.1.84 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.51 37.0 2.82e-01 75.3% 49.5%
3236743 3523.1.1.0 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.51 34.0 2.71e-01 87.6% 31.3%
4299999 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.51 39.0 3.29e-01 85.4% 83.0%
2516467 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.50 37.0 3.15e-01 82.0% 93.3%
D3 medium residues 38-51_323-357_393-416_494-544
PDB
Domain cluster: rep: envelope_fusion_protein__YP_009345747__Mythimna_unipuncta_granulovirus_B__2169746__D27-50_306-403_477-502
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12259.14 best Baculo_F 44.3 1.50e-11 41.9% 8.4%
PF12259.14 Baculo_F 38.8 6.60e-10 33.9% 5.8%