Back to structures

FFC_09252017_16_scaffold_13_prodigal-single.1__X__X__00023

Bact-Vir

FFC_09252017_16_scaffold_13_prodigal-single.1__X__X__00023

Identity

Kingdom:
phage

Quality

82.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 39-89
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.78 68.0 5.60e-01 100.0% 62.8%
3m62B00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.78 66.0 5.85e-01 94.1% 84.7%
2bwfA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.77 65.0 5.68e-01 94.1% 79.2%
4hwiB01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.77 65.0 5.79e-01 94.1% 84.5%
4dbgA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.76 64.0 5.49e-01 94.1% 78.0%
1se9A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.76 64.0 5.16e-01 96.1% 54.5%
1z2mA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.76 64.0 5.58e-01 94.1% 79.2%
6jl3A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.76 63.0 5.63e-01 94.1% 83.8%
5fr6A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.75 65.0 5.59e-01 100.0% 63.9%
5ejrA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.75 65.0 5.54e-01 100.0% 86.0%
3w1yB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.75 65.0 5.21e-01 100.0% 50.0%
2dziA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.74 61.0 5.30e-01 94.1% 76.5%
6djwA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.74 64.0 5.72e-01 98.0% 84.7%
2l7rA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.74 61.0 5.44e-01 94.1% 79.7%
2dzjA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.74 61.0 5.12e-01 94.1% 58.0%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.73 63.0 5.35e-01 100.0% 90.8%
2kanA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.73 61.0 5.45e-01 94.1% 84.9%
2bpsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.73 61.0 5.26e-01 94.1% 65.4%
2gbmA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.73 61.0 5.25e-01 94.1% 86.4%
6kykA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.73 62.0 5.31e-01 98.0% 86.9%
3jyuA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.72 59.0 4.96e-01 94.1% 61.1%
2lxaA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.72 62.0 5.19e-01 98.0% 59.8%
2incC00 3.10.20.270 Alpha Beta › Roll › Ubiquitin-like (UB roll) › TmoB-like 0.71 59.0 5.07e-01 94.1% 85.5%
3goeA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.71 61.0 5.28e-01 98.0% 65.0%
1wfyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.71 60.0 5.43e-01 98.0% 70.8%
1ef1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.71 60.0 5.30e-01 100.0% 69.6%
5c6dA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.70 58.0 4.69e-01 98.0% 53.3%
4kv2A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 53.0 4.52e-01 98.0% 75.6%
1ttnA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 52.0 4.74e-01 98.0% 68.9%
1j0gA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 52.0 4.42e-01 98.0% 55.4%
2uwqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 52.0 4.52e-01 100.0% 65.1%
4p6vF01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.62 49.0 4.12e-01 92.2% 87.4%
2juoA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 49.0 4.32e-01 98.0% 93.3%
2k53A00 1.10.3910.10 Mainly Alpha › Orthogonal Bundle › SP0561-like › SP0561-like 0.54 45.0 4.17e-01 98.0% 72.9%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.54 40.0 2.83e-01 86.3% 83.2%
1k8rB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 43.0 3.85e-01 98.0% 84.1%
2uv4A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 48.0 3.46e-01 100.0% 79.0%
6f8hC00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 37.0 3.24e-01 86.3% 53.8%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3665958 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.78 67.0 5.13e-01 94.1% 55.5%
2080737 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.78 64.0 5.71e-01 94.1% 63.5%
4527488 221.1.1.88 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CLU_N 0.77 68.0 5.81e-01 98.0% 62.5%
4027052 221.1.1.25 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › APG12 0.77 67.0 5.48e-01 100.0% 52.6%
3678623 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.77 65.0 5.71e-01 94.1% 80.0%
3198877 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.77 64.0 5.66e-01 94.1% 82.7%
3730104 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.77 64.0 5.41e-01 94.1% 72.9%
4028696 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.77 67.0 5.88e-01 98.0% 85.3%
3455099 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.76 66.0 5.24e-01 100.0% 51.4%
3464487 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.76 67.0 5.85e-01 98.0% 84.0%
4505100 221.1.1.88 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CLU_N 0.76 66.0 5.12e-01 98.0% 76.4%
3226771 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.76 67.0 5.72e-01 98.0% 82.5%
3995034 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.76 66.0 5.68e-01 98.0% 83.7%
3260376 221.1.1.12 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RBD 0.75 64.0 5.42e-01 96.1% 57.6%
3167732 221.1.1.182 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBL_AVO1 0.75 65.0 5.30e-01 98.0% 72.6%
1884919 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.75 65.0 5.29e-01 98.0% 68.4%
3740109 221.1.1.88 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CLU_N 0.75 65.0 5.50e-01 98.0% 75.3%
3509304 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.75 65.0 5.01e-01 100.0% 45.2%
3177935 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.75 62.0 5.49e-01 94.1% 82.7%
3742903 221.1.1.182 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBL_AVO1 0.75 64.0 5.57e-01 98.0% 85.0%
3741078 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.75 63.0 5.54e-01 94.1% 82.7%
3726545 221.1.1.182 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBL_AVO1 0.74 63.0 5.50e-01 98.0% 62.5%
3936497 221.1.1.88 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CLU_N 0.74 61.0 5.43e-01 94.1% 82.7%
4517865 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.74 61.0 5.44e-01 94.1% 88.0%
3253020 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.74 63.0 4.78e-01 98.0% 41.6%
3692942 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.74 63.0 5.48e-01 98.0% 87.5%
3891779 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.73 64.0 5.38e-01 98.0% 71.8%
3726645 221.1.1.88 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CLU_N 0.73 63.0 5.46e-01 98.0% 80.0%
3592654 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.73 64.0 5.52e-01 100.0% 83.7%
3850466 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.73 63.0 4.09e-01 100.0% 30.4%
3250300 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.73 62.0 5.52e-01 98.0% 86.7%
3180990 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.72 60.0 5.32e-01 94.1% 78.7%
3255406 221.1.1.41 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UN_NPL4 0.72 60.0 5.44e-01 94.1% 88.6%
3410509 221.1.1.60 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_5 0.72 60.0 5.09e-01 94.1% 57.6%
3618567 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.72 59.0 5.27e-01 94.1% 84.0%
4376203 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.72 56.0 5.18e-01 96.1% 67.7%
4998477 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.72 61.0 5.44e-01 98.0% 69.3%
3515165 221.1.1.12 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RBD 0.72 59.0 5.69e-01 96.1% 86.7%
3227571 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.72 59.0 5.20e-01 96.1% 63.7%
3753480 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.72 61.0 5.03e-01 98.0% 64.2%
3900526 221.1.1.12 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RBD 0.71 59.0 5.18e-01 96.1% 62.5%
3254182 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.71 58.0 5.21e-01 94.1% 82.7%
3271391 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.71 61.0 5.32e-01 100.0% 67.5%
3512556 221.1.1.7 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX 0.71 59.0 4.30e-01 98.0% 88.7%
3932100 221.7.1.3 a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL 0.71 59.0 4.84e-01 98.0% 63.0%
3414356 221.1.1.12 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RBD 0.71 58.0 5.33e-01 96.1% 72.9%
3237656 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 59.0 5.07e-01 98.0% 58.8%
3920797 221.1.1.12 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RBD 0.70 57.0 5.07e-01 96.1% 63.7%
3924912 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 61.0 5.20e-01 100.0% 72.9%
4334558 221.1.1.178 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Sde2_N_Ubi_yeast 0.70 61.0 5.24e-01 98.0% 80.0%
3231712 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 60.0 5.16e-01 100.0% 81.2%
3254503 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 59.0 4.96e-01 98.0% 67.8%
3508099 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 57.0 5.12e-01 94.1% 82.7%
3776212 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 58.0 5.17e-01 96.1% 66.7%
3453249 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 57.0 5.08e-01 94.1% 84.0%
3388746 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.69 55.0 5.11e-01 94.1% 90.0%
3620971 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.69 58.0 5.22e-01 98.0% 73.3%
3457377 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.69 55.0 4.98e-01 94.1% 84.0%
4003832 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.68 58.0 5.16e-01 98.0% 73.3%
3420159 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.68 56.0 5.03e-01 98.0% 70.7%
3742658 221.1.1.40 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TUG-UBL1 0.66 53.0 4.79e-01 94.1% 82.7%
4947536 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.51 35.0 2.46e-01 74.5% 55.0%