Back to structures

FFC_09252017_16_scaffold_13_prodigal-single.1__X__X__00181

Bact-Vir

FFC_09252017_16_scaffold_13_prodigal-single.1__X__X__00181

Identity

Kingdom:
phage

Quality

74.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-57
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k1zA02 1.10.150.720 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Haloacid dehalogenase-like hydrolase 0.76 68.0 5.88e-01 100.0% 70.2%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.73 58.0 4.78e-01 100.0% 47.6%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.73 64.0 5.70e-01 100.0% 68.4%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.70 55.0 4.90e-01 100.0% 59.5%
4cxfA01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.69 58.0 5.07e-01 100.0% 60.9%
6lo8F01 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.69 50.0 4.68e-01 79.6% 63.8%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.67 48.0 3.33e-01 75.9% 23.9%
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.67 49.0 4.65e-01 79.6% 66.2%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.67 53.0 4.36e-01 100.0% 46.4%
3jrqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.67 58.0 3.70e-01 100.0% 20.7%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 57.0 3.65e-01 100.0% 86.2%
4yzgA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.65 54.0 3.44e-01 98.1% 19.0%
3pr6A00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.64 54.0 4.07e-01 100.0% 91.0%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.64 41.0 3.40e-01 81.5% 35.6%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.64 53.0 4.67e-01 100.0% 63.2%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.63 53.0 3.38e-01 100.0% 38.5%
3hgtA00 3.40.50.12360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 48.0 3.05e-01 83.3% 66.1%
5uckB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.63 52.0 3.38e-01 100.0% 86.9%
3fhnA04 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.62 48.0 3.64e-01 83.3% 44.3%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 46.0 3.63e-01 81.5% 93.2%
4a55A01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.62 42.0 2.63e-01 70.4% 11.9%
1b25A02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.62 51.0 3.65e-01 100.0% 29.8%
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.62 50.0 4.47e-01 90.7% 71.8%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 47.0 4.37e-01 87.0% 66.2%
1vplA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 51.0 3.42e-01 100.0% 23.9%
3hiuD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 44.0 3.23e-01 77.8% 69.1%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 46.0 4.22e-01 85.2% 61.6%
5du9B02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.60 54.0 3.53e-01 100.0% 35.5%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.60 44.0 3.88e-01 81.5% 55.3%
2x6hA03 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.60 50.0 3.46e-01 100.0% 28.0%
5hwoA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.59 49.0 2.91e-01 92.6% 61.7%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.59 41.0 3.61e-01 70.4% 56.4%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.59 42.0 3.00e-01 74.1% 51.6%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 45.0 3.66e-01 83.3% 71.2%
4ivfA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 45.0 3.53e-01 85.2% 55.2%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.57 41.0 4.27e-01 74.1% 81.6%
1csmA00 1.10.590.10 Mainly Alpha › Orthogonal Bundle › Chorismate Mutase, subunit A › Chorismate mutase, AroQ class superfamily, eukaryotic 0.57 44.0 2.90e-01 87.0% 18.7%
3r6nA02 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 42.0 3.07e-01 79.6% 33.5%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.57 40.0 3.48e-01 75.9% 50.6%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.57 43.0 4.07e-01 83.3% 77.6%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.56 49.0 3.44e-01 100.0% 38.2%
7nc3F01 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 43.0 3.44e-01 83.3% 54.4%
3lxzB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 43.0 3.27e-01 83.3% 44.9%
1y7yA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 39.0 3.72e-01 79.6% 98.6%
4qdnA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.52 41.0 3.32e-01 90.7% 81.4%
3cbuA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 39.0 2.99e-01 83.3% 46.3%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.51 40.0 3.08e-01 92.6% 53.8%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.50 45.0 3.87e-01 100.0% 92.9%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029464 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.80 65.0 5.73e-01 100.0% 61.3%
4405342 589.1.2.1 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.73 54.0 3.88e-01 83.3% 26.5%
3209189 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 53.0 3.95e-01 79.6% 34.1%
3353659 6026.1.1.26 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › H_PPase 0.72 51.0 4.34e-01 77.8% 44.2%
3474154 4120.1.1.1 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › zf-Tim10_DDP 0.71 51.0 4.60e-01 79.6% 56.0%
3261624 3470.1.1.0 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain 0.71 51.0 5.31e-01 79.6% 86.0%
4094756 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.70 52.0 3.34e-01 79.6% 17.2%
4149728 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.70 52.0 4.57e-01 79.6% 53.8%
3593195 110.1.1.0 alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.70 55.0 4.76e-01 100.0% 55.3%
3699397 4120.1.1.1 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › zf-Tim10_DDP 0.70 50.0 4.75e-01 79.6% 64.6%
3297509 148.1.3.318 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28551 0.70 56.0 5.21e-01 100.0% 70.0%
3174080 6169.1.1.0 extended segments › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 0.69 53.0 4.49e-01 83.3% 55.6%
4024374 4120.1.1.1 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › zf-Tim10_DDP 0.69 49.0 4.59e-01 79.6% 60.0%
3183189 4120.1.1.1 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › zf-Tim10_DDP 0.69 49.0 4.24e-01 79.6% 47.7%
5047260 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.68 57.0 4.56e-01 100.0% 53.4%
3230949 103.4.1.1 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX 0.67 50.0 4.57e-01 83.3% 61.3%
4241107 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.67 52.0 3.46e-01 87.0% 55.2%
2832675 2006.1.4.8 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_5 0.67 51.0 3.48e-01 85.2% 32.2%
4999427 2004.1.2.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain 0.66 46.0 3.16e-01 74.1% 20.7%
3685114 605.4.1.0 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.66 45.0 3.49e-01 72.2% 94.2%
3220017 174.1.1.13 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF2700 0.66 47.0 3.51e-01 77.8% 33.1%
4945001 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 53.0 4.58e-01 100.0% 58.0%
3715420 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.65 48.0 3.81e-01 81.5% 38.3%
3926793 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.64 53.0 3.38e-01 96.3% 39.0%
3586184 5059.1.1.5 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA 0.63 48.0 2.92e-01 81.5% 75.9%
3198931 5059.1.1.3 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.63 48.0 2.99e-01 81.5% 84.5%
5078899 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.63 51.0 4.27e-01 100.0% 56.4%
4633539 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.62 51.0 3.15e-01 94.4% 22.9%
3838265 152.1.2.1 alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.62 54.0 5.03e-01 100.0% 88.4%
3512183 131.1.1.15 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › Ppx-GppA_III 0.62 52.0 4.19e-01 100.0% 50.4%
4599106 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.62 49.0 4.08e-01 85.2% 55.6%
3271908 210.2.1.0 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain 0.61 52.0 3.37e-01 100.0% 26.5%
4178096 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.61 51.0 4.26e-01 100.0% 61.9%
3275693 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.61 51.0 3.49e-01 100.0% 70.7%
5051683 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.61 47.0 3.73e-01 83.3% 60.9%
3269062 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.61 46.0 2.91e-01 87.0% 14.8%
3227678 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.60 44.0 3.61e-01 79.6% 78.0%
3948200 164.1.1.4 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › Anti-adapt_IraP 0.60 47.0 4.11e-01 85.2% 58.7%
3269813 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.59 49.0 3.14e-01 100.0% 47.7%
3468013 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.58 44.0 3.62e-01 81.5% 51.0%
3285463 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.58 41.0 3.49e-01 75.9% 68.9%
3636049 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.57 47.0 3.38e-01 94.4% 77.0%
3291377 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.56 40.0 3.36e-01 75.9% 64.2%
2986104 3226.1.1.3 alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › HCO3_cotransp 0.56 45.0 2.85e-01 94.4% 63.0%
5008138 169.1.1.1 alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.55 47.0 2.86e-01 100.0% 17.4%
3430024 109.4.1.1185 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BTB-POZ_ANK-like 0.54 41.0 2.73e-01 83.3% 20.2%
4027107 4984.1.1.0 alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain 0.53 45.0 3.10e-01 96.3% 35.3%
3589590 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.51 43.0 4.24e-01 100.0% 90.0%
3404906 4044.1.1.0 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.51 41.0 3.38e-01 88.9% 82.0%
None 0.51 44.0 4.10e-01 100.0% 77.1%