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FFC_09252017_16_scaffold_13_prodigal-single.1__X__X__00197

Bact-Vir

FFC_09252017_16_scaffold_13_prodigal-single.1__X__X__00197

Identity

Kingdom:
phage

Quality

85.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-156
PDB
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.71 44.0 5.40e-01 94.5% 100.0%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 28.0 3.80e-01 96.9% 82.5%
3up1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 36.0 3.97e-01 79.7% 69.2%
3shsA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 39.0 4.03e-01 71.9% 66.7%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.60 31.0 3.79e-01 98.4% 77.8%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 34.0 3.26e-01 99.2% 47.3%
7alkA01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 44.0 4.06e-01 77.3% 76.9%
3lqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 33.0 3.59e-01 79.7% 65.7%
2hgsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 39.0 4.21e-01 99.2% 81.1%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 38.0 4.11e-01 99.2% 80.6%
3v6oB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 34.0 3.76e-01 71.1% 76.0%
2q7nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 32.0 3.39e-01 87.5% 66.4%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.52 46.0 4.30e-01 95.3% 85.9%
1cjyA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 37.0 3.79e-01 94.5% 74.6%
2vq9A00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.51 33.0 3.44e-01 100.0% 68.3%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.61e-01 71.9% 72.0%
4iu2B01 2.60.40.3810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.84e-01 94.5% 81.2%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.50 31.0 3.39e-01 95.3% 74.5%
4ye4H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.71e-01 78.1% 77.0%
2enqA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 41.0 3.86e-01 100.0% 70.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1560729 1.1.5.35 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF 0.72 53.0 5.15e-01 98.4% 68.1%
3936663 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 51.0 5.18e-01 90.6% 77.6%
3949305 1.1.13.54 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_L 0.68 63.0 6.03e-01 100.0% 97.2%
3504737 1.1.13.54 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_L 0.67 62.0 6.02e-01 100.0% 98.6%
3586477 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 59.0 5.26e-01 100.0% 98.9%
5002750 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 49.0 5.32e-01 96.9% 100.0%
4944073 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 35.0 3.73e-01 87.5% 66.1%
3335487 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 37.0 3.41e-01 95.3% 53.1%
3461242 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.54 27.0 2.93e-01 98.4% 54.5%
5033051 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 39.0 3.74e-01 100.0% 63.3%
3685936 11.1.1.150 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Velvet 0.54 43.0 3.74e-01 95.3% 56.3%
3519916 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 35.0 3.98e-01 96.1% 87.4%
3512104 922.1.1.9 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_2 0.53 24.0 3.21e-01 85.2% 87.3%
3579183 206.1.3.14 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP 0.51 45.0 3.26e-01 99.2% 65.3%
4962773 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 34.0 3.53e-01 95.3% 72.5%
D2 high residues 316-386
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wjnA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 33.0 3.06e-01 80.3% 49.5%
1g5aA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 26.0 2.59e-01 71.8% 41.9%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971882 3071.1.1.0 a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.61 47.0 4.90e-01 100.0% 93.8%
D3 medium residues 162-259
PDB
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p5zX02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.74 61.0 6.13e-01 100.0% 89.7%
4uhvA02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.72 56.0 5.80e-01 100.0% 89.1%
2x8xX01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 39.0 4.32e-01 100.0% 98.7%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 3.16e-01 100.0% 41.0%
2pmzB05 3.90.1070.20 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.52 38.0 4.09e-01 88.8% 93.8%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.52 42.0 3.56e-01 89.8% 67.8%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3790843 325.1.8.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N 0.59 31.0 3.86e-01 89.8% 83.3%
4944060 259.1.1.0 a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain 0.55 41.0 4.40e-01 99.0% 92.9%
4881205 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.54 36.0 4.13e-01 70.4% 93.0%
4622010 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 41.0 2.82e-01 100.0% 21.7%
D4 medium residues 260-315_387-432_448-461
PDB
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.74 49.0 5.44e-01 73.3% 84.8%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.72 56.0 6.12e-01 92.2% 97.9%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.70 49.0 5.25e-01 84.5% 82.4%
3cnrB00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.66 46.0 5.14e-01 88.8% 91.4%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.65 45.0 4.69e-01 86.2% 76.1%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 43.0 4.71e-01 75.0% 84.4%
5ylyA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 44.0 4.54e-01 75.0% 84.8%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 50.0 4.54e-01 86.2% 78.8%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 41.0 4.39e-01 72.4% 81.0%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 43.0 4.55e-01 85.3% 82.7%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 48.0 4.35e-01 85.3% 77.4%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 39.0 4.40e-01 89.7% 88.5%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.59 46.0 4.58e-01 86.2% 79.5%
2b5iB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 32.0 3.54e-01 76.7% 67.0%
2kcaA00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.56 43.0 4.41e-01 93.1% 84.4%
2weiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 35.0 3.89e-01 85.3% 81.1%
1vwxf00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.55 38.0 3.98e-01 72.4% 82.6%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.53 41.0 3.97e-01 83.6% 80.4%
2kkuA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.53 45.0 4.23e-01 91.4% 87.1%
1wzlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.54e-01 75.0% 65.3%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 37.0 4.08e-01 85.3% 90.2%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.51 40.0 3.60e-01 83.6% 67.9%
3c4aA02 3.30.9.20 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.51 36.0 3.31e-01 90.5% 56.8%
2x3eA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 41.0 3.78e-01 87.9% 99.4%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.50 39.0 3.80e-01 84.5% 81.1%
5gj7A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.50 38.0 4.12e-01 87.1% 98.9%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3967745 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.77 41.0 5.04e-01 71.6% 81.3%
4105189 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.76 51.0 5.57e-01 85.3% 82.1%
4246480 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.75 51.0 5.64e-01 85.3% 85.3%
3947980 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.74 51.0 5.47e-01 85.3% 81.0%
4854964 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 41.0 4.72e-01 75.0% 75.6%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 41.0 4.24e-01 70.7% 59.1%
3720023 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 52.0 5.58e-01 89.7% 88.0%
4214150 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.70 48.0 4.98e-01 82.8% 73.6%
3288253 1.1.13.55 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF4873 0.69 50.0 5.57e-01 85.3% 95.6%
3970827 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 49.0 5.65e-01 81.0% 100.0%
4234915 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.67 50.0 5.09e-01 83.6% 78.3%
5056905 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.66 44.0 4.94e-01 72.4% 87.8%
3972645 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.66 49.0 4.67e-01 83.6% 66.7%
4943168 1.1.7.144 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11 0.66 48.0 5.23e-01 89.7% 91.6%
3490032 1.1.7.45 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.65 46.0 4.54e-01 91.4% 68.3%
3974053 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.65 44.0 4.74e-01 71.6% 81.0%
4033714 1.1.13.7 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tail 0.64 48.0 5.26e-01 93.1% 95.8%
3945286 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 44.0 4.57e-01 73.3% 79.0%
3572941 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.62 44.0 4.57e-01 74.1% 80.0%
3991271 1.1.9.33 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_NSUN2 0.61 38.0 4.50e-01 87.9% 91.3%
4061526 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.61 42.0 4.54e-01 72.4% 83.0%
3739461 1.1.7.4 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.60 43.0 2.97e-01 75.0% 22.4%
4207197 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 39.0 4.20e-01 87.1% 79.0%
3247872 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.57 42.0 4.13e-01 75.9% 96.8%
3935249 11.1.1.955 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_4th 0.55 35.0 3.67e-01 75.0% 71.0%
3251680 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.53 39.0 3.86e-01 76.7% 97.6%
3661923 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.53 37.0 3.69e-01 82.8% 69.2%
3293552 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.53 41.0 3.75e-01 81.9% 81.7%
3256332 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.53 38.0 3.74e-01 75.0% 96.8%
3262643 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.52 38.0 3.79e-01 76.7% 96.8%
5023996 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.52 43.0 4.38e-01 87.9% 98.2%
3259959 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 4.07e-01 75.9% 97.0%
3254455 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.52 43.0 3.82e-01 89.7% 86.1%
3959047 4052.1.1.0 beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like 0.50 44.0 4.33e-01 98.3% 97.6%
3278991 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.50 39.0 3.51e-01 83.6% 61.8%
3726444 4052.1.1.0 beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like 0.50 41.0 4.28e-01 90.5% 95.5%