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FFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00031
Bact-VirFFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00031
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-33_121-148
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qt2B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 46.0 | 3.95e-01 | 70.5% | 50.0% |
| 2je8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 40.0 | 3.24e-01 | 82.0% | 32.7% |
| 4ksnA00 | 6.20.250.80 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.66 | 45.0 | 4.39e-01 | 70.5% | 95.4% |
| 5gv0A00 | 2.40.160.110 | Mainly Beta › Beta Barrel › Porin › | 0.64 | 45.0 | 3.32e-01 | 73.8% | 86.4% |
| 4gs7C02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 43.0 | 3.74e-01 | 70.5% | 52.0% |
| 3hh7A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.64 | 47.0 | 4.65e-01 | 78.7% | 75.4% |
| 5cvmA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 45.0 | 2.88e-01 | 75.4% | 28.6% |
| 2dbjA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 43.0 | 3.58e-01 | 73.8% | 47.7% |
| 4do8A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.61 | 45.0 | 4.41e-01 | 78.7% | 75.8% |
| 2n1kA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 41.0 | 3.42e-01 | 70.5% | 45.3% |
| 7emfR01 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.60 | 51.0 | 3.72e-01 | 96.7% | 79.4% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.60 | 43.0 | 3.31e-01 | 75.4% | 37.8% |
| 2r5oA01 | 2.70.50.60 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain | 0.59 | 42.0 | 3.19e-01 | 77.0% | 44.4% |
| 1f94A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.58 | 42.0 | 4.21e-01 | 78.7% | 74.6% |
| 5jpnB04 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 39.0 | 3.18e-01 | 70.5% | 59.5% |
| 3shsA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 39.0 | 3.23e-01 | 73.8% | 53.7% |
| 1c77B00 | 3.10.20.130 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 37.0 | 3.12e-01 | 75.4% | 82.8% |
| 4ll1C02 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 40.0 | 3.17e-01 | 82.0% | 50.7% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 36.0 | 2.81e-01 | 72.1% | 65.8% |
| 4hscX04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.53 | 35.0 | 3.00e-01 | 70.5% | 50.0% |
| 3jamD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.52 | 35.0 | 2.80e-01 | 70.5% | 45.9% |
| 4ncdA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 2.91e-01 | 72.1% | 61.0% |
| 1zldA00 | 2.60.40.1920 | Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA | 0.50 | 35.0 | 2.96e-01 | 73.8% | 53.9% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3730441 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.74 | 52.0 | 3.22e-01 | 73.8% | 44.9% |
| 1124210 | 54.1.1.7 ↗ | beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix_Pneumo_C | 0.69 | 48.0 | 4.09e-01 | 72.1% | 95.9% |
| 4870269 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 47.0 | 4.65e-01 | 70.5% | 77.8% |
| 3797533 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 46.0 | 3.78e-01 | 72.1% | 51.3% |
| 4459485 | 382.1.1.7 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type | 0.65 | 48.0 | 4.77e-01 | 78.7% | 75.4% |
| 3846579 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.64 | 49.0 | 3.50e-01 | 80.3% | 49.4% |
| 3585676 | 11.1.1.593 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › INTS7_C | 0.64 | 44.0 | 3.51e-01 | 72.1% | 45.7% |
| 3924006 | 11.2.1.52 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem | 0.63 | 43.0 | 3.32e-01 | 72.1% | 99.3% |
| 5027725 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 43.0 | 2.87e-01 | 72.1% | 41.2% |
| 5034828 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 43.0 | 3.49e-01 | 73.8% | 43.5% |
| 1883531 | 11.15.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Perfringolysin O beta sandwich domain › Perfringolysin O beta sandwich domain › Thiol_cytolys_C | 0.59 | 41.0 | 3.46e-01 | 73.8% | 59.1% |
| 3512250 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.59 | 47.0 | 3.51e-01 | 86.9% | 85.3% |
| 4940074 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 39.0 | 3.43e-01 | 70.5% | 65.3% |
| 5032694 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 37.0 | 3.03e-01 | 82.0% | 37.3% |
| 3927952 | 11.2.1.52 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem | 0.56 | 40.0 | 3.08e-01 | 77.0% | 91.3% |
| 3226169 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 39.0 | 3.13e-01 | 75.4% | 46.4% |
| 3576642 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.54 | 41.0 | 3.05e-01 | 83.6% | 52.9% |
| 3509244 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.54 | 44.0 | 3.27e-01 | 91.8% | 51.5% |
| 3738025 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.54 | 40.0 | 2.93e-01 | 78.7% | 51.2% |
| 3999331 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.54 | 45.0 | 3.54e-01 | 90.2% | 64.0% |
| 3622948 | 11.2.1.52 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem | 0.54 | 39.0 | 3.09e-01 | 82.0% | 100.0% |
| 3507240 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 37.0 | 2.90e-01 | 77.0% | 91.7% |
| 4115421 | 11.15.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Perfringolysin O beta sandwich domain › Perfringolysin O beta sandwich domain › Thiol_cytolys_C | 0.51 | 35.0 | 2.93e-01 | 72.1% | 47.0% |
| 3507788 | 11.1.1.76 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GMP_PDE_delta | 0.51 | 40.0 | 2.99e-01 | 86.9% | 64.8% |
| 3689291 | 220.1.1.69 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Meiotic_rec114 | 0.50 | 37.0 | 2.89e-01 | 100.0% | 32.9% |
D2
medium
residues 34-120
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bjmC00 | 1.20.58.1680 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 47.0 | 3.51e-01 | 70.1% | 34.0% |
| 3fgrA02 | 1.10.439.20 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 | 0.58 | 33.0 | 2.95e-01 | 83.9% | 37.5% |
| 1w98B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 38.0 | 3.48e-01 | 82.8% | 50.9% |
| 4rm7A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.57 | 46.0 | 4.17e-01 | 100.0% | 63.9% |
| 1yeyA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 40.0 | 3.60e-01 | 100.0% | 53.2% |
| 3ripA02 | 1.20.120.1900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain | 0.55 | 47.0 | 3.29e-01 | 94.3% | 35.8% |
| 3solA00 | 1.20.58.1630 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS | 0.54 | 36.0 | 3.59e-01 | 94.3% | 64.8% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.54 | 43.0 | 4.55e-01 | 98.9% | 98.7% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.54 | 45.0 | 3.99e-01 | 89.7% | 91.1% |
| 3tp3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 47.0 | 4.00e-01 | 98.9% | 61.5% |
| 1zu4A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.54 | 43.0 | 4.32e-01 | 92.0% | 86.2% |
| 3pjaJ01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.54 | 41.0 | 3.63e-01 | 96.6% | 55.7% |
| 2ykgA03 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.53 | 36.0 | 3.17e-01 | 83.9% | 45.9% |
| 1rx0C01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.52 | 43.0 | 3.88e-01 | 98.9% | 64.2% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 39.0 | 3.54e-01 | 79.3% | 73.3% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 31.0 | 3.54e-01 | 71.3% | 82.0% |
| 1d9cA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.52 | 38.0 | 3.44e-01 | 78.2% | 66.9% |
| 3l9vC00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 39.0 | 3.17e-01 | 89.7% | 39.8% |
| 2a0uB01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.52 | 44.0 | 3.61e-01 | 94.3% | 55.6% |
| 4c3eM00 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.52 | 39.0 | 3.24e-01 | 80.5% | 72.9% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.52 | 38.0 | 4.03e-01 | 78.2% | 89.3% |
| 2yhsA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.52 | 39.0 | 3.77e-01 | 79.3% | 81.4% |
| 5j1hA01 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 36.0 | 2.84e-01 | 72.4% | 64.8% |
| 1ldjA01 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.51 | 42.0 | 3.80e-01 | 100.0% | 64.0% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 37.0 | 3.77e-01 | 81.6% | 77.6% |
| 3pfdA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.51 | 40.0 | 3.73e-01 | 100.0% | 67.0% |
| 3o6xA02 | 1.20.120.1560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 35.0 | 2.95e-01 | 72.4% | 48.0% |
| 1hm7B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 44.0 | 3.10e-01 | 100.0% | 64.6% |
| 7c1iA01 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.50 | 41.0 | 4.00e-01 | 93.1% | 80.0% |
| 1f68A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.50 | 36.0 | 3.45e-01 | 75.9% | 64.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3177557 | 196.1.1.0 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS | 0.58 | 48.0 | 4.02e-01 | 94.3% | 60.6% |
| 3342169 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 38.0 | 2.79e-01 | 71.3% | 64.6% |
| 3365768 | 109.4.1.1273 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 | 0.54 | 37.0 | 3.54e-01 | 71.3% | 75.2% |
| 3851909 | 150.3.1.4 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IFN-gamma | 0.51 | 37.0 | 3.61e-01 | 78.2% | 80.0% |