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FFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00059

Bact-Vir

FFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00059

Identity

Kingdom:
phage

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58
PDB
Domain cluster: rep: SRR1747055_scaffold_2_prodigal-single.1__X__X__00259__D1-52
D2 high residues 73-183
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3v0rA01 2.40.350.20 Mainly Beta › Beta Barrel › AOC barrel-like › 0.53 40.0 3.99e-01 81.1% 92.5%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4202727 2492.1.1.36 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like 0.56 42.0 3.62e-01 79.3% 94.6%
D3 high residues 327-380
PDB
Domain cluster: rep: OR515479.1__WNL63470.1__X__00194__D454-499
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.83 59.0 6.05e-01 74.1% 86.3%
1aiwA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.82 56.0 5.40e-01 72.2% 83.9%
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.82 58.0 6.08e-01 74.1% 91.7%
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.80 55.0 4.50e-01 72.2% 49.5%
1ed7A00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.77 52.0 5.61e-01 70.4% 100.0%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.72 65.0 5.84e-01 100.0% 93.2%
4n0qA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 51.0 3.77e-01 96.3% 57.3%
1cb8A02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 41.0 2.75e-01 75.9% 34.6%
4n6mB00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.00e-01 81.5% 94.8%
1uh9A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 35.0 2.74e-01 77.8% 81.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4009008 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.85 57.0 5.75e-01 70.4% 94.5%
5026481 64.3.1.3 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.85 60.0 6.22e-01 74.1% 86.0%
3972100 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.85 60.0 5.60e-01 74.1% 69.2%
4307941 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.84 58.0 5.63e-01 72.2% 96.6%
2389402 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.82 58.0 5.86e-01 74.1% 81.5%
1322863 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.81 55.0 5.88e-01 70.4% 100.0%
1322862 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.81 55.0 5.86e-01 72.2% 97.9%
4110715 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.79 54.0 5.32e-01 72.2% 79.7%
4149799 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.78 54.0 5.59e-01 72.2% 98.0%
3971347 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.78 56.0 5.49e-01 75.9% 84.5%
4009007 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.77 54.0 5.63e-01 74.1% 94.0%
4444075 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.77 53.0 5.77e-01 72.2% 100.0%
1694867 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.77 54.0 5.44e-01 74.1% 94.3%
4009012 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.75 55.0 5.20e-01 77.8% 81.2%
4233290 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.74 53.0 5.44e-01 75.9% 96.0%
3781211 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 36.0 2.87e-01 79.6% 23.8%
1291025 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.72 65.0 5.84e-01 100.0% 93.2%
3934136 304.31.1.0 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.67 47.0 3.32e-01 75.9% 29.8%
4398943 217.2.1.1 ↗ a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.66 43.0 3.86e-01 70.4% 48.0%
2736861 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.65 45.0 4.23e-01 74.1% 71.6%
2736862 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.62 43.0 4.10e-01 75.9% 79.4%
3758330 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.58 30.0 2.60e-01 79.6% 31.8%
5042355 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.56 36.0 3.15e-01 77.8% 42.4%
2581407 241.14.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.50 37.0 3.30e-01 79.6% 57.7%