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FFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00079

Bact-Vir

FFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00079

Identity

Kingdom:
phage

Quality

69.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-88
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.80 64.0 5.17e-01 100.0% 47.4%
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.76 68.0 5.95e-01 100.0% 72.2%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 60.0 5.31e-01 100.0% 59.5%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 59.0 5.49e-01 100.0% 68.8%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 65.0 5.67e-01 100.0% 73.9%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 65.0 5.51e-01 100.0% 69.6%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 65.0 5.79e-01 100.0% 71.3%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 59.0 5.52e-01 100.0% 72.8%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 64.0 5.66e-01 100.0% 69.4%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 58.0 5.41e-01 100.0% 70.8%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.70 62.0 5.62e-01 100.0% 76.0%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 60.0 4.86e-01 100.0% 52.8%
1dl5A02 3.55.20.10 Alpha Beta › 3-Layer(bab) Sandwich › Protein-l-isoaspartate O-methyltransferase; Chain: A, domain 2 › Protein-L-isoaspartyl O-methyltransferase, C-terminal domain 0.66 41.0 3.56e-01 92.1% 41.4%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 57.0 5.05e-01 100.0% 71.2%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.64 44.0 4.25e-01 85.5% 63.5%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 44.0 4.01e-01 84.2% 55.7%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 44.0 4.84e-01 100.0% 96.6%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 4.35e-01 100.0% 85.5%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.59 50.0 4.37e-01 96.1% 63.6%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.11e-01 100.0% 72.4%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 42.0 3.24e-01 76.3% 60.5%
4ntdA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 46.0 3.44e-01 88.2% 86.1%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.58 43.0 3.45e-01 80.3% 84.8%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 51.0 3.90e-01 100.0% 82.5%
3akhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 47.0 3.10e-01 92.1% 29.7%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.56 48.0 3.97e-01 100.0% 78.8%
3u6xS00 2.60.40.3320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 50.0 4.52e-01 100.0% 73.3%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.56 37.0 3.83e-01 82.9% 74.3%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.55 36.0 3.63e-01 88.2% 65.4%
2b9lA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 45.0 3.61e-01 90.8% 95.5%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.55 42.0 3.02e-01 85.5% 64.1%
4ufcA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.55 43.0 2.86e-01 86.8% 47.9%
3it5G00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.54 44.0 3.38e-01 89.5% 63.3%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 40.0 3.12e-01 92.1% 36.5%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.74e-01 92.1% 80.0%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 35.0 3.70e-01 97.4% 78.8%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 42.0 3.13e-01 92.1% 94.1%
2f8xC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.64e-01 81.6% 91.5%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 38.0 3.99e-01 100.0% 91.2%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 32.0 3.30e-01 100.0% 66.7%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.50 43.0 3.59e-01 100.0% 52.4%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4560070 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 72.0 5.74e-01 100.0% 70.7%
3890749 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 61.0 5.81e-01 100.0% 72.2%
3890869 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.76 69.0 5.17e-01 100.0% 46.1%
3933227 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 68.0 5.91e-01 100.0% 67.8%
3919542 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.75 59.0 5.37e-01 100.0% 64.0%
3939687 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.75 67.0 6.14e-01 100.0% 80.0%
4587235 220.1.1.197 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 0.75 68.0 5.87e-01 100.0% 68.7%
2697431 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.74 67.0 5.94e-01 100.0% 75.0%
2797459 220.1.1.3 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1,Retinal 0.74 67.0 5.84e-01 100.0% 71.7%
3553885 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.74 67.0 5.50e-01 100.0% 63.0%
3493320 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.74 67.0 5.49e-01 100.0% 56.3%
3896415 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.74 60.0 5.57e-01 100.0% 70.5%
3506373 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.74 67.0 5.49e-01 100.0% 63.7%
3863963 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.74 66.0 5.61e-01 100.0% 68.0%
3887127 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.74 61.0 5.19e-01 100.0% 56.7%
3899275 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.73 65.0 5.40e-01 100.0% 58.5%
None 0.73 66.0 5.23e-01 100.0% 54.7%
3247727 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 55.0 4.47e-01 100.0% 43.6%
3526272 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.73 66.0 5.23e-01 100.0% 58.0%
3458058 220.1.1.67 beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.73 66.0 5.54e-01 100.0% 62.4%
3873394 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.73 65.0 5.15e-01 100.0% 52.9%
3263180 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 58.0 5.13e-01 100.0% 60.0%
1833801 220.1.1.25 beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.72 65.0 5.79e-01 100.0% 71.3%
4146498 220.1.1.25 beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.72 63.0 5.73e-01 100.0% 73.0%
3413910 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.72 65.0 5.35e-01 100.0% 57.8%
3925291 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.72 65.0 5.39e-01 100.0% 65.4%
3478983 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 64.0 5.77e-01 100.0% 72.4%
3617706 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 64.0 5.84e-01 100.0% 83.0%
3869436 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 59.0 5.36e-01 100.0% 68.0%
3518065 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.71 64.0 5.27e-01 100.0% 60.7%
3828854 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.71 64.0 5.26e-01 100.0% 62.2%
3882269 220.1.1.25 beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.71 64.0 5.74e-01 100.0% 76.2%
3750640 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.71 64.0 5.63e-01 100.0% 71.8%
3884716 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.71 63.0 5.24e-01 100.0% 56.3%
3842576 220.1.1.67 beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.71 63.0 5.41e-01 100.0% 64.2%
3924744 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.71 63.0 5.16e-01 100.0% 57.1%
3791851 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 62.0 4.99e-01 100.0% 69.0%
4662910 244.4.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Complex1_49kDa 0.67 37.0 3.41e-01 71.1% 41.0%
3784777 220.1.1.32 beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.67 60.0 4.64e-01 100.0% 50.9%
3927305 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 60.0 5.27e-01 100.0% 80.9%
4123449 4.8.1.35 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.63 47.0 4.61e-01 90.8% 74.1%
4028997 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 52.0 4.97e-01 100.0% 78.9%
3560835 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.61 44.0 2.88e-01 76.3% 60.9%
3474310 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.60 41.0 3.60e-01 90.8% 48.2%
5012485 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.60 49.0 4.94e-01 96.1% 90.7%
3389124 2484.2.1.0 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.60 45.0 4.24e-01 84.2% 65.3%
3886139 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 41.0 4.33e-01 100.0% 83.1%
3921043 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 41.0 2.60e-01 72.4% 21.1%
5022848 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 39.0 4.24e-01 100.0% 88.3%
5043498 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.58 45.0 2.83e-01 82.9% 89.2%
4942807 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.58 42.0 4.73e-01 98.7% 100.0%
3969410 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.57 49.0 4.25e-01 96.1% 72.3%
3388278 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 39.0 2.63e-01 92.1% 19.4%
4882945 1.1.1.5 beta barrels › cradle loop barrel › RIFT-related › acid protease › Zn_protease 0.56 48.0 4.03e-01 96.1% 57.3%
4059006 9.9.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB 0.55 48.0 4.15e-01 100.0% 98.4%
3324935 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 42.0 3.92e-01 84.2% 82.0%
4941858 5.1.4.49 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PSII_BNR 0.54 49.0 3.12e-01 100.0% 90.0%
3743943 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 49.0 3.00e-01 100.0% 90.8%
3386801 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 3.85e-01 85.5% 69.0%
4027873 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 44.0 3.72e-01 94.7% 68.6%
3313644 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.53 40.0 3.60e-01 80.3% 93.3%
3833506 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 40.0 3.68e-01 84.2% 77.1%
3739528 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.53 38.0 2.76e-01 75.0% 28.3%
3929718 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.53 48.0 2.96e-01 100.0% 99.6%
3650231 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 40.0 3.67e-01 85.5% 89.5%
3345971 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 39.0 3.69e-01 84.2% 82.0%
4029623 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 43.0 2.59e-01 90.8% 15.4%
3520126 5.1.4.329 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.52 46.0 2.98e-01 100.0% 85.8%
3814715 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 39.0 3.66e-01 84.2% 81.0%
4021295 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.52 46.0 3.62e-01 100.0% 97.5%
3189495 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 41.0 3.73e-01 89.5% 87.6%
4932452 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 43.0 4.01e-01 93.4% 94.7%
3400954 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.51 45.0 2.96e-01 98.7% 99.7%
3229953 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.50 45.0 2.96e-01 98.7% 100.0%
3642082 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.50 45.0 2.99e-01 100.0% 98.4%