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FFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00088
Bact-VirFFC_09252017_16_scaffold_2_prodigal-single.1__X__X__00088
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-193
Domain cluster:
rep: CG10_big_fil_rev_8_21_14_0-10_scaffold_17_prodigal-single.1__X__X__00080__D4-138
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26128.2 best | Gad2 | 55.4 | 9.30e-15 | 90.0% | 85.4% |
D2
high
residues 195-247
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w5dA02 | 3.50.80.20 | Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 | 0.64 | 49.0 | 4.02e-01 | 84.9% | 76.5% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.64 | 46.0 | 3.94e-01 | 77.4% | 52.3% |
| 1kjnA00 | 3.40.50.10160 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MTH777-like | 0.59 | 49.0 | 3.52e-01 | 90.6% | 88.8% |
| 6hcdD00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 44.0 | 3.35e-01 | 83.0% | 54.8% |
| 3mk7B02 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.59 | 45.0 | 3.25e-01 | 84.9% | 86.4% |
| 3iabB01 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.58 | 50.0 | 4.09e-01 | 98.1% | 60.6% |
| 3tb6B02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 44.0 | 3.36e-01 | 92.5% | 40.4% |
| 3fhnA04 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.56 | 46.0 | 3.59e-01 | 100.0% | 86.3% |
| 2ig3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 38.0 | 3.11e-01 | 92.5% | 91.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4466993 | 2007.1.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 | 0.66 | 47.0 | 3.40e-01 | 75.5% | 97.9% |
| 5047283 | 2007.1.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase | 0.66 | 47.0 | 3.71e-01 | 75.5% | 36.4% |
| 3669782 | 604.22.1.0 ↗ | alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain | 0.59 | 40.0 | 3.70e-01 | 73.6% | 82.7% |
| 162098 | 106.1.1.3 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Bac_globin | 0.50 | 38.0 | 3.11e-01 | 92.5% | 91.3% |